Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073076,2950TC58.1% 257.0 / inf 597intergenic (+353/‑781)USA300HOU_0072/USA300HOU_0075universal stress protein/lysophospholipase
Reads supporting (aligned to +/- strand):  ref base T (142/108);  new base C (202/144);  total (344/253)
Fisher's exact test for biased strand distribution p-value = 7.37e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 605 total aligned reads displayed.

TATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGG  >  CP000730/76155‑76432
                                                                                                                                            |                                                                                                                                           
              cAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATc                                                                                                                               >  2:844064/1‑141 (MQ=35)
                       atttataGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCt                                                                                                                              <  1:343172/130‑1 (MQ=2)
                        tttataatataaTTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGTTATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTa                                                                                                                     >  2:651461/3‑141 (MQ=2)
                         ttataGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTaa                                                                                                                    <  2:601701/140‑1 (MQ=17)
                         ttaaaattatattatAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTaa                                                                                                                    >  1:910177/15‑141 (MQ=11)
                           ataatataATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAga                                                                                                                  >  1:441049/5‑140 (MQ=12)
                           ataGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGa                                                                                                                                     <  2:784560/122‑1 (MQ=18)
                           ataGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAg‑g                                                                                                                 <  1:12286/141‑1 (MQ=17)
                            taatataATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAgag                                                                                                                 >  1:89250/4‑139 (MQ=12)
                                ataATTTTAACAAAAAGGAGTCTTCGGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACg                                                                                                           <  2:678557/141‑1 (MQ=17)
                                 taactttAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACgt                                                                                                          >  1:711196/5‑141 (MQ=12)
                                 taATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACgt                                                                                                          >  2:310043/1‑141 (MQ=17)
                                   aTTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACgtgg                                                                                                        <  2:463906/141‑1 (MQ=12)
                                     tttAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACgtggtg                                                                                                      <  2:553717/141‑1 (MQ=17)
                                     tttAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACgtggtg                                                                                                      <  2:119630/141‑1 (MQ=32)
                                      ttAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGgtgt                                                                                                     >  2:2760/1‑141 (MQ=12)
                                       aaaCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTa                                                                                                    <  2:292349/140‑1 (MQ=17)
                                        aaCAAAACGGAGTCTTCTGTATGAACTTTTTCTGATATAAAAAATTTAACAAGGATGTTATCACTGTAGCAGTTGGCTACTATCTAAGATATGCATAGAGCTATCGTGATATATATGAAATATTAAG‑A‑GTACGTAgtgtta                                                                                                   >  2:858691/1‑139 (MQ=11)
                                        aaCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTaa                                                                                                   >  2:502585/1‑141 (MQ=17)
                                        aaCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACgtttacacc                                                                                                   <  2:257324/141‑8 (MQ=11)
                                        aaCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTaa                                                                                                   >  2:82754/1‑141 (MQ=17)
                                         aCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTaaa                                                                                                  >  2:566472/1‑141 (MQ=17)
                                         aCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTaaa                                                                                                  <  2:897738/141‑1 (MQ=17)
                                              aaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTtc                                                                                             <  2:131875/141‑1 (MQ=12)
                                              aaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTtc                                                                                             <  2:188128/141‑1 (MQ=12)
                                               aGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTtca                                                                                            <  2:200010/141‑1 (MQ=17)
                                                   gTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTg                                                                                                                             >  2:248793/1‑106 (MQ=33)
                                                    tcttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCAtt                                                                                       >  1:172446/1‑141 (MQ=32)
                                                     cttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATTACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTc                                                                                      >  1:633712/1‑141 (MQ=255)
                                                     cttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTc                                                                                      <  1:262685/141‑1 (MQ=12)
                                                               aaCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTAc                                                                            >  1:183176/1‑141 (MQ=17)
                                                                aCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTAcc                                                                           <  1:685902/141‑1 (MQ=12)
                                                                    tttCAGATATAAACAATTTAACAAGGATGTTATCAGTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTGAACGATCTACCGTTg                                                                       >  1:762047/1‑141 (MQ=11)
                                                                    tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTg                                                                       >  2:395284/1‑141 (MQ=17)
                                                                    tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGtagac                                                                            >  1:747483/1‑132 (MQ=17)
                                                                    tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTg                                                                       >  2:67045/1‑141 (MQ=255)
                                                                    tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTg                                                                       >  2:379179/1‑141 (MQ=255)
                                                                      tCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTggg                                                                     >  2:151571/1‑141 (MQ=17)
                                                                      tCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATATAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTggg                                                                     <  1:320269/141‑1 (MQ=17)
                                                                      tCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTg                                                                       >  2:732606/1‑139 (MQ=255)
                                                                       cAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGt                                                                    <  2:524159/141‑1 (MQ=17)
                                                                       cAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGt                                                                    <  2:836533/141‑1 (MQ=255)
                                                                        aGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCAGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTggggt                                                                   >  2:864482/1‑139 (MQ=11)
                                                                         gATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTc                                                                  >  2:138295/1‑141 (MQ=255)
                                                                          atatAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGTCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGgtgt                                                                                                     >  1:723534/1‑105 (MQ=11)
                                                                          atatAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGTCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGgtgt                                                                                                     <  2:723534/105‑1 (MQ=11)
                                                                          atatAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCa                                                                 >  1:648502/1‑141 (MQ=255)
                                                                          atatAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCa                                                                 <  2:233998/141‑1 (MQ=255)
                                                                           tataAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCaa                                                                >  1:61334/1‑141 (MQ=255)
                                                                            ataAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAg                                                               <  2:703357/141‑1 (MQ=17)
                                                                             taAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGa                                                              >  2:475708/1‑141 (MQ=255)
                                                                                   aTTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGc                                                        >  1:884888/1‑141 (MQ=17)
                                                                                        aCAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCaa                                                   >  1:94262/1‑141 (MQ=17)
                                                                                        aCAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTa                                                                                                                     <  2:44496/77‑1 (MQ=255)
                                                                                         cAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTaa                                                                                                                    <  2:92682/77‑1 (MQ=255)
                                                                                         cAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAAt                                                  >  1:84979/1‑141 (MQ=17)
                                                                                         cAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGa                                                                                                                            <  2:426562/69‑1 (MQ=255)
                                                                                         cAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCaa                                                                >  2:745470/1‑127 (MQ=255)
                                                                                          aaGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAAtt                                                 >  1:232461/1‑141 (MQ=255)
                                                                                               tGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTtata                                            <  1:554864/141‑1 (MQ=35)
                                                                                                 ttATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATc                                          >  2:583947/1‑141 (MQ=255)
                                                                                                  tATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCa                                         <  2:811407/141‑1 (MQ=25)
                                                                                                  tATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCa                                         <  1:383318/141‑1 (MQ=21)
                                                                                                  tATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCa                                         <  1:99827/141‑1 (MQ=255)
                                                                                                   aTCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTaaa                                                                                                  >  1:487860/1‑83 (MQ=35)
                                                                                                   aTCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCaa                                        >  1:511889/1‑141 (MQ=35)
                                                                                                   aTCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATc                                          >  1:453829/1‑141 (MQ=11)
                                                                                                     cACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAAt                                      >  1:419147/1‑141 (MQ=255)
                                                                                                     cACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAAt                                      <  1:204320/141‑1 (MQ=255)
                                                                                                      aCTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAAtt                                     >  1:47763/1‑141 (MQ=25)
                                                                                                         gTAGCCGTTGGCTACTATCTAAGAGATGCCTTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGGAAACGGTCATCATTAAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTgg                                  >  1:596623/1‑141 (MQ=11)
                                                                                                           agctgTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGgaa                                >  2:766661/5‑141 (MQ=25)
                                                                                                            gccaacggCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGgaag                               >  2:350904/7‑141 (MQ=11)
                                                                                                            gccaacggCTACTATCTAAGATAAGCATTGAGTTATCGTGATAGATCTGAAATATCAAG‑G‑GAACGAGGTCTAAACGATCATCATTCAACGGTCTACCCTTGCGTTCAAGAATATGCCCCAATTTTATATCAAAttctgcac                               >  2:624039/7‑135 (MQ=11)
                                                                                                            gCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAAttt                                                <  2:405424/124‑1 (MQ=255)
                                                                                                            gCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGgaag                               >  1:538019/1‑141 (MQ=255)
                                                                                                            gCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGgaag                               >  1:672818/1‑141 (MQ=255)
                                                                                                                ttGGCTACTATCTAAGATACGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGaaaa                           >  2:687786/1‑141 (MQ=25)
                                                                                                                 tGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGaaaaa                          >  1:244384/1‑141 (MQ=255)
                                                                                                                  ggCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAA‑TTTATATCAAATTTGGAAGAAAAAGc                        <  1:835114/141‑1 (MQ=11)
                                                                                                                   actactaTCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGc                        >  1:872438/2‑141 (MQ=25)
                                                                                                                    ctactaTCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCa                       <  1:370832/141‑1 (MQ=255)
                                                                                                                      actaTCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATa                     >  1:798978/1‑141 (MQ=255)
                                                                                                                      actaTCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATa                     <  1:582701/141‑1 (MQ=255)
                                                                                                                        taTCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaa                   >  1:766702/1‑141 (MQ=35)
                                                                                                                        taTCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaa                   >  2:48804/1‑141 (MQ=35)
                                                                                                                         aTCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaa                  <  1:279292/141‑1 (MQ=35)
                                                                                                                         aTCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaa                  <  1:734346/141‑1 (MQ=255)
                                                                                                                          tCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaa                 <  1:464334/141‑1 (MQ=255)
                                                                                                                          tCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaa                 <  1:563685/141‑1 (MQ=255)
                                                                                                                          tCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaa                 >  2:801775/1‑141 (MQ=255)
                                                                                                                            tAAGATATGCATTGGGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAGAGCATaaaaaag               >  2:33823/1‑139 (MQ=11)
                                                                                                                              aGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaagct             >  2:35894/1‑137 (MQ=17)
                                                                                                                              aGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaagct             >  1:819309/1‑137 (MQ=17)
                                                                                                                              aGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTa             >  1:144386/1‑141 (MQ=39)
                                                                                                                              aGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaagct             <  1:401312/141‑5 (MQ=11)
                                                                                                                               gATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaagctt            <  2:578689/141‑6 (MQ=11)
                                                                                                                                 tatGCATTGAGCTATAGTGATATATATGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTAATCATTCAACGATCTACCGTTGGGTTCAAGAATATGACCAAATTTTATATAAAATTTGGAAGAAAAAGAATaaaaaagattat          >  1:338812/1‑134 (MQ=11)
                                                                                                                                      aTTGTGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGTTGTAAACGTTCATCATTCAACGGTCTACCGATGGGTTCAAGAATATGCCCCAATTTTATATCAAATTAGGAAGAAAAAGCATAAAAAGCTAATTACaaa     >  2:880910/1‑141 (MQ=255)
                                                                                                                                      aTTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACaaa     >  1:101587/1‑141 (MQ=40)
                                                                                                                                            |                                                                                                                                           
TATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGG  >  CP000730/76155‑76432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑