Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073076,3530GA53.1% 57.9 / inf 437intergenic (+411/‑723)USA300HOU_0072/USA300HOU_0075universal stress protein/lysophospholipase
Reads supporting (aligned to +/- strand):  ref base G (120/85);  new base A (147/85);  total (267/170)
Fisher's exact test for biased strand distribution p-value = 3.26e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 443 total aligned reads displayed.

GTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGGCGTATTGATGAGACGTACATCAAAATAAAAGGAAAATGGAGCTATTTATATCGTGCCATTG  >  CP000730/76213‑76493
                                                                                                                                              |                                                                                                                                            
gTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACgg                                                                                                                                              <  1:891087/141‑1 (MQ=17)
     aaCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTAc                                                                                                                                         >  2:95659/1‑141 (MQ=17)
     aaCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCt                                                                                                                                           >  1:473891/1‑139 (MQ=255)
     aaCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTAc                                                                                                                                         >  1:559813/1‑141 (MQ=255)
     aaCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTAc                                                                                                                                         >  1:713637/1‑141 (MQ=255)
      aCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTAcc                                                                                                                                        >  1:332861/1‑141 (MQ=255)
        tATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGt                                                                                                                                      <  2:910177/141‑1 (MQ=255)
        tATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGt                                                                                                                                      <  2:651338/141‑1 (MQ=255)
         aTTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGtt                                                                                                                                     >  2:466554/1‑141 (MQ=255)
         aTTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGtt                                                                                                                                     >  1:95172/1‑141 (MQ=255)
          tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAGCGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTg                                                                                                                                    >  2:396968/1‑141 (MQ=11)
          tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTg                                                                                                                                    >  2:419235/1‑141 (MQ=255)
            tCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTggg                                                                                                                                  >  2:121534/1‑141 (MQ=32)
            tCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTggg                                                                                                                                  <  2:237912/141‑1 (MQ=255)
             cAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGt                                                                                                                                 <  2:836533/141‑1 (MQ=255)
             cAGATATAAACAATTTAACAAGGATGTTATAACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCt                                                                                                                                           >  1:738063/1‑131 (MQ=18)
              aGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTgggct                                                                                                                                >  2:389752/1‑139 (MQ=255)
              aGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGtt                                                                                                                                <  2:214610/141‑1 (MQ=255)
              aGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCAGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTggggt                                                                                                                                >  2:864482/1‑139 (MQ=11)
                atatAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCa                                                                                                                              >  1:648502/1‑141 (MQ=255)
                  ataAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAg                                                                                                                            <  1:743501/141‑1 (MQ=17)
                  ataAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAg                                                                                                                            <  2:345986/141‑1 (MQ=17)
                   taAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGa                                                                                                                           >  2:756258/1‑141 (MQ=12)
                   taAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGa                                                                                                                           >  1:81191/1‑141 (MQ=255)
                   taAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGa                                                                                                                           >  2:887282/1‑141 (MQ=255)
                      aCAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTATAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAata                                                                                                                        >  1:242205/1‑141 (MQ=17)
                      aCAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAata                                                                                                                        >  1:582740/1‑141 (MQ=12)
                           ttAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATCTGCATTGCGATCTCGTGATCTATATGACATACTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGccc                                                                                                                   <  1:550646/141‑1 (MQ=11)
                           ttAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTCCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGccc                                                                                                                   >  2:140037/1‑141 (MQ=11)
                              aCAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGTATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCaa                                                                                                                >  2:354477/1‑141 (MQ=17)
                              aCAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTATCGTTGGGTTCAAGAATATGCCCCaa                                                                                                                >  1:680203/1‑141 (MQ=12)
                              aCAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCaa                                                                                                                >  2:674647/1‑141 (MQ=17)
                              aCAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCaa                                                                                                                <  2:69381/141‑1 (MQ=255)
                               cAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAAt                                                                                                               >  2:783289/1‑141 (MQ=17)
                               cAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCaa                                                                                                                             >  2:745470/1‑127 (MQ=255)
                               cAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAAt                                                                                                               >  2:102763/1‑141 (MQ=255)
                                 aGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAAttt                                                                                                             >  2:572373/1‑141 (MQ=17)
                                 aGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAAttt                                                                                                             >  2:148299/1‑141 (MQ=17)
                                   gATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATCTta                                                                                                           >  2:361048/1‑141 (MQ=17)
                                   gATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTta                                                                                                           >  2:669792/1‑141 (MQ=255)
                                      tttATCACTGTAGCCGTTTGCTACTATCGAATTTATGCAGGGAGCTTTCTTGAGATGTGTTAAATATTAAG‑A‑GAGCTGGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTatat                                                                                                        <  1:686981/140‑1 (MQ=2)
                                      gTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTatat                                                                                                        <  1:621658/141‑1 (MQ=255)
                                       ttATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATc                                                                                                       <  1:297837/141‑1 (MQ=25)
                                       ttATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGGGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTCTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATc                                                                                                       <  2:524921/141‑1 (MQ=11)
                                       ttATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATc                                                                                                       <  1:384673/141‑1 (MQ=255)
                                       ttATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATc                                                                                                       >  2:583947/1‑141 (MQ=255)
                                        tATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCa                                                                                                      <  2:305928/141‑1 (MQ=35)
                                        tATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCa                                                                                                      <  2:191607/141‑1 (MQ=255)
                                        tATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCa                                                                                                      <  2:806834/141‑1 (MQ=255)
                                        tATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCa                                                                                                      >  1:458446/1‑141 (MQ=255)
                                         aTCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GGACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATcga                                                                                                     >  2:817097/1‑139 (MQ=25)
                                         aTCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATc                                                                                                       >  1:453829/1‑141 (MQ=11)
                                           cACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAAt                                                                                                   >  1:419147/1‑141 (MQ=255)
                                            aCTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAAtt                                                                                                  >  1:47763/1‑141 (MQ=25)
                                             cTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAAttt                                                                                                 <  1:611950/141‑1 (MQ=255)
                                              tGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTg                                                                                                <  1:23554/141‑1 (MQ=255)
                                              tGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTg                                                                                                <  1:339686/141‑1 (MQ=255)
                                               gTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTgg                                                                                               >  1:172933/1‑141 (MQ=35)
                                               gTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTgg                                                                                               <  1:208525/141‑1 (MQ=255)
                                               gTAGCCGTTGGCTACTATCTAAGAGATGCCTTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGGAAACGGTCATCATTAAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTgg                                                                                               >  1:596623/1‑141 (MQ=11)
                                                 aGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGgaa                                                                                             >  1:276713/1‑141 (MQ=255)
                                                  gCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAAttt                                                                                                             >  1:405424/1‑124 (MQ=255)
                                                    cGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGgaagaa                                                                                          >  2:796311/1‑141 (MQ=255)
                                                     gTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGaaa                                                                                         >  2:323922/1‑141 (MQ=255)
                                                     aacggCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGaaa                                                                                         >  2:824881/4‑141 (MQ=11)
                                                     aacggCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGaaa                                                                                         >  2:849050/4‑141 (MQ=11)
                                                        ggCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAA‑TTTATATCAAATTTGGAAGAAAAAGc                                                                                     <  1:835114/141‑1 (MQ=11)
                                                         gCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGc                                                                                     <  1:375546/141‑1 (MQ=35)
                                                         gCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAAAAATAAA‑G‑GAACGAGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGaaaaaaaaaa                                                                                     <  2:70540/141‑3 (MQ=11)
                                                          ctactaTCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCa                                                                                    >  1:660573/1‑141 (MQ=255)
                                                            actaTCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATa                                                                                  >  1:798523/1‑141 (MQ=35)
                                                             ctaTCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaa                                                                                 <  1:756258/141‑1 (MQ=255)
                                                              taTCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaa                                                                                >  1:766702/1‑141 (MQ=35)
                                                              taTCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaa                                                                                >  2:48617/1‑141 (MQ=35)
                                                              taTCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaa                                                                                <  2:252005/141‑1 (MQ=35)
                                                              taTCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaa                                                                                >  2:279292/1‑141 (MQ=35)
                                                              taTCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaa                                                                                >  2:132559/1‑141 (MQ=255)
                                                                tCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaa                                                                              <  1:563685/141‑1 (MQ=255)
                                                                 cTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaa                                                                             <  1:858810/141‑2 (MQ=255)
                                                                 cTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaa                                                                             <  2:684976/141‑2 (MQ=255)
                                                                  tAAGATATGCATTGGGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAGAGCATaaaaaag                                                                            >  2:33823/1‑139 (MQ=11)
                                                                  tAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaag                                                                            >  1:521400/1‑139 (MQ=18)
                                                                  tAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaag                                                                            >  2:443471/1‑139 (MQ=255)
                                                                   aaGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAGATTTGGAAGAAAAAGCATaaaaaagc                                                                           >  2:727143/1‑138 (MQ=11)
                                                                    aGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTa                                                                          >  1:144386/1‑141 (MQ=39)
                                                                    aGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaagct                                                                          >  2:492443/1‑137 (MQ=11)
                                                                    aGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCACCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaagct                                                                          >  1:873289/1‑137 (MQ=11)
                                                                     gATATGCATTGAGCTATCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaagctt                                                                         <  2:578689/141‑6 (MQ=11)
                                                                            aTTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACaaa                                                                  >  1:101587/1‑141 (MQ=40)
                                                                                     tCGTGATATATCTGAAATATTAAG‑A‑GAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTg                                                                                                <  2:62098/102‑1 (MQ=255)
                                                                                               tCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGGCGTATTGATGAGACGt                                               <  2:556521/141‑1 (MQ=40)
                                                                                                  gAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGGCGTATTGATGAGACGTACa                                            >  1:903220/1‑141 (MQ=40)
                                                                                                    aaTATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGGCGTATTGATGAGACGTACATc                                          <  1:844064/141‑1 (MQ=40)
                                                                                                          aaG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGgaag                                                                                            >  1:501515/1‑85 (MQ=35)
                                                                                                            aagagAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTg                                                                                                >  2:601251/5‑81 (MQ=255)
                                                                                                                   cGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGGCGTATTGATGAGACGTACATCAAAATAAAAGGaa                             >  1:253037/1‑141 (MQ=40)
                                                                                                                                 tcatcaTTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGGCGTATTGATGAGACGTACATCAAAATAAAAGGAAAATGGAGCTATTta               >  2:561839/1‑141 (MQ=40)
                                                                                                                                        tCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGGCGTATTGATGAGACGTACATCAAAATAAAAGGAAAATGGAGCTATTTATATCGTg        <  1:196354/141‑1 (MQ=39)
                                                                                                                                              gTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGGCGTATTGATGAGACGTACATCAAAATAAAAGGAAAATGGAGCTATTTATATCGTGCCATTg  >  1:44149/1‑141 (MQ=40)
                                                                                                                                              gTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGGCGTATTGATGAGACGTACATCAAAATAAAAGGAAAATGGAGCTATTTATATCGTGCCATTg  >  1:822907/1‑141 (MQ=40)
                                                                                                                                              |                                                                                                                                            
GTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAG‑G‑GAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGGCGTATTGATGAGACGTACATCAAAATAAAAGGAAAATGGAGCTATTTATATCGTGCCATTG  >  CP000730/76213‑76493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑