| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 826356 | 28 (0.820) | 3 (0.100) | 3/246 | 5.0 | 11.2% | intergenic (+92/+78) | tagO/yvyE | hypothetical membrane protein/hypothetical membrane protein |
| ? | CP000730 | = 826419 | 22 (0.710) | intergenic (+155/+15) | tagO/yvyE | hypothetical membrane protein/hypothetical membrane protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AACTACCGACCAATATTAAATTTAATTAGTCGTAAGTCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/826208‑826356‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaaaagcactATCATAAGACGGTAAATATCAATTGCGTATTATTAAACGACAATTGAAGTACACGTTTATGGCAGTGCTTTTTATATTTGAAATTTAATACAAAAAAATTGTAAAGAGTAAAGCCATATAATACAAATTATCCCATACAGC < CP000730/826419‑826279 AACTACCGACCAATATTAAATTTAATTAGTCGTAAGTCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAA < 1:119529/141‑1AACTACCGACCAATATTAAATTTAATTAGTCGTAAGTCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAA > 1:284950/1‑141 ACTACCGACCAATATTAAATTTAATTAGTCGTAAGTCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAA > 2:116502/1‑141 CCAATATTAAATTTAATTAGTCGTAAGTCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAA > 1:396286/1‑135 CCAATATTAAATTTAATTAGTCGTAAGTCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAA < 2:396286/135‑1 TCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACT < 2:29481/113‑1 TCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACT > 1:29481/1‑113 AATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTATCATAAGACGGTAAATATCAATTGCGTATTATTAAACGACAAT > 2:139420/1‑141 GATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTATCATAAGACGGTAAATATCAATTGCGTATTATTAAACGACAATTGAAGTACACGTTTATGGCAGTGCTTTT < 2:368059/141‑1 TATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTATCATAAGACGGTAAATATCAATTGCGTATTATTAAACGACAATTGAAGTACACGTTTATGGCAGTGCTTTTTATATTTGA < 1:139420/141‑1 AAAGCACTATCATAAGACGGTAAATATCAATTGCGTATTATTAAACGACAATTGAAGTACACGTTTATGGCAGTGCTTTTTATATTTGAAATTTAATACAAAAAAATTGTAAAGAGTAAAGCCATATAATACAAATTATCC > 2:286941/1‑141 TATCATAAGACGGTAAATATCAATTGCGTATTATTAAACGACAATTGAAGTACACGTTTATGGCAGTGCTTTTTATATTTGAAATTTAATAC‑AAAAAATTGTAAAGAGTAAAGCCATATAATACAAATTATCCCATACAGC < 1:375743/141‑1 TATCATAAGACGGTAAATATCAATTGCGTATTATTAAACGACAATTGAAGTACACGTTTATGGCAGTGCTTTTTATATTTGAAATTTAATAC‑AAAAAATTGTAAAGAGTAAAGCCATATAATACAAATTATCCCATACAGC < 1:375736/141‑1 AACTACCGACCAATATTAAATTTAATTAGTCGTAAGTCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/826208‑826356‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaaaagcactATCATAAGACGGTAAATATCAATTGCGTATTATTAAACGACAATTGAAGTACACGTTTATGGCAGTGCTTTTTATATTTGAAATTTAATACAAAAAAATTGTAAAGAGTAAAGCCATATAATACAAATTATCCCATACAGC < CP000730/826419‑826279 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |