New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 1822865 =93 (1.050)5 (0.060) 5/240 NT 5.6% intergenic (+186/+60) USA300HOU_1697/ackA possible universal stress protein/acetate kinase
?CP000730 1822909 = 83 (1.010)intergenic (+230/+16) USA300HOU_1697/ackA possible universal stress protein/acetate kinase

CTCATTCACCAGTTAAAGTTGTCGTTATTCCAACAGATGAAGAAAGTATGATTGCCCGTGATGTTATGACATTCGGTGGTTTAAAATAATTTTTAAATAAATATTAAGCGTCTATCTCCGCTACAATTATATGTA‑‑GGAGGTAGACGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1823013‑1822865
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagacgcttAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCCTTCTTTACCACGTAGTAAG  >  CP000730/1822909‑1823048
                                                                                                                                                                                                                                                                                                     
CTCATTCACCAGTTAAAGTTGTCGTTATTCCAACAGATGAAGAAAGTATGATTGCCCGTGATGTTATGACATTCGGTGGTTTAAAATAATTTTTAAATAAATATTAAGCGTCTATCTCCGCTACAATTATATGTA‑‑GGAGGT                                                                                                                                                       <  2:165582/141‑1
 TCATTCACCAGTTAAAGTTGTCGTTATTCCAACAGATGAAGAAAGTATGATTGCCCGTGATGTTATGACATTCGGTGGTTTAAAATAATTTTTAAATAAATATTAAGCGTCTATCTCCGCTACAATTATATGTA‑‑GGAGGTA                                                                                                                                                      <  2:526488/141‑1
 TCATTCACCAGTTAAAGTTGTCGTTATTCCAACAGATGAAGAAAGTATGATTGCCCGTGATGCTATGACATTCGGTGGTTTAAAATAATTTTTAAATAAATATTAAGCGTCTATCTCCGCTACAATTATATGTA‑‑GGAGGTA                                                                                                                                                      <  2:573226/141‑1
  CATTCACCAGTTAAAGTTGTCGTTATTCCAACAGATGAAGAAAGTATGATTGCCCGTGATGTTATGACATTCGGTGGTTTAAAATAATTTTTAAATAAATATTGAGCGTCTATCTCCGCTACAATTATATGTA‑‑GGAGGTAG                                                                                                                                                     <  1:785033/141‑1
  CATTCACCAGTTAAAGTTGTCGTTATTCCAACAGATGAAGAAAGTATGATTGCCCGTGATGTTATGACATTCGGTGGTTTAAAATAATTTTTAAATAAATATTAAGCGTCTATCTCCGCTACAATTATATGTA‑‑GGAGGTAG                                                                                                                                                     <  1:54178/141‑1
  CATTCACCAGTTAAAGTTGTCGTTATTCCAACAGATGAAGAAAGTATGATTGCCCGTGATGTTATGACATTCGGTGGTTTAAAATAATTTTTAAATAAATATTAAGCGTCTATCTCCGCTACAATTATATGTA‑‑GGAGGTAG                                                                                                                                                     >  2:128317/1‑141
  CATTCACCAGTTAAAGTTGTCGTTATTCCAACAGATGAAGAAAGTATGATTGCCCGTGATGTTATGACATTCGGTGGTTTAAAATAATTTTTAAATAAATATTAAGCGTCTATCTCCGCTACAATTATATGTA‑‑GGAGGTAG                                                                                                                                                     <  1:53991/141‑1
   atcCACCAGTTAAAGTTGTCGTTATTCCAACAGATGAAGAAAGTATGATTGCCCGTGATGTTATGACATTCGGTGGTTTAAAATAATTTTTAAATAAATATTAAGCGTCTATCTCCGCTACAATTATATGTA‑‑GGAGGTAGA                                                                                                                                                    <  1:1048031/138‑1
   ATTCACCAGTTAAAGTTGTCGTTATTCCAACAGATGAAGAAAGTATGATTGCCCGTGATGTTATGACATTCGGTGGTTTAAAATAATTTTTAAATAAATATTAAGCGTCTATCTCCGCTACAATTATATGTA‑‑GGAGGTAGA                                                                                                                                                    >  1:941942/1‑141
   ATTCACCAGTTAAAGTTGTCGTTATTCCAACAGATGAAGAAAGTATGATTGCCCGTGATGTTATGACATTCGGTGGTTTAAAATAATTTTTAAATAAATATTAAGCGTCTATCTCCGCTACAATTATATGTA‑‑GGAGGTAGA                                                                                                                                                    >  1:1017090/1‑141
   ATTCACCAGTTAAAGTTGTCGTTATTCCAACAGATGAAGAAAGTATGATTGCCCGTGATGTTATGACATTCGGTGGTTTAAAATAATTTTTAAATAAATATTAAGCGTCTATCTCCGCTACAATTATATGTA‑‑GGAGGTAGA                                                                                                                                                    >  1:957973/1‑141
    TTCACCAGTTAAAGTTGTCGTTATTCCAACAGATGAAGAAAGTATGATTGCCCGTGATGTTATGACATTCGGTGGTTTAAAATAATTTTTAAATAAATATTAAGCGTCTATCTCCGCTACAATTATATGTA‑‑GGAGGTAGAC                                                                                                                                                   >  1:750456/1‑141
     TCACCAGTTAAAGTTGTCGTTATTCCAACAGATGAAGAAAGTATGATTGCCCGTGATGTTATGACATTCGGTGGTTTAAAATAATTTTTAAATAAATATTAAGCGTCTATCTCCGCTACAATTATATGTA‑‑GGAGGTAGACG                                                                                                                                                  >  1:696123/1‑141
       ACCAGTTAAAGTTGTCGTTATTCCAACAGATGAAGAAAGTATGATTGCCCGTGATGTTATGACATTCGGTGGTTTAAAATAATTTTTAAATAAATATTAAGCGTCTATCTCCGCTACAATTATATGTA‑‑GGAGGTAGACGCT                                                                                                                                                <  2:972372/141‑1
       ACCAGTTAAAGTTGTCGTTATTCCAACAGATGAAGAAAGTATGATTGCCCGTGATGTTATGACATTCGGTGGTTTAAAATAATTTTTAAATAAATATTAAGCGTCTATCTCCGCTACAATTATATGTA‑‑GGAGGTAGACGCT                                                                                                                                                <  1:633256/141‑1
                    GTCGTTATTCCAACAGATGAAGAAAGTATGATTGCCCGTGATGTTATGACATTCGGTGGTTTAAAATAATTTTTAAATAAATATTAAGCGTCTACCTC‑‑CTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTA                                                                                                                                  <  2:374254/141‑1
                                                      CCCGTGATGTTATGACATTCGGTGGTTTAAAATAATTTTTAAATAAATATTAAGCGTCTATCTCAACTACAATTATATGTA‑‑GTATGTATACGCTTAATATTTATTTAAAAATTATTTTAAACAACCAAATGTAATAACATC                                                                                                >  2:900948/1‑141
                                                                                                                TATCTCCGCTACAATTATATGTA‑‑GGAGGTAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTAGAATAACGACAACTTTAACTGGTGAATGA                                      >  2:777578/1‑141
                                                                                                                     CCGCTACAATTATATGTA‑‑GGAGGTAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATA                                 >  1:151699/1‑141
                                                                                                                      CGCTACAATTATATGTA‑‑GGAGGTAGACGCTTTTTGTATTGTTTGAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATA                                 >  2:137449/1‑141
                                                                                                                                                 GACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCCTTCTTTACCACGT        <  1:550169/141‑1
                                                                                                                                                 GACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCCTTCTTTACCACGT        >  1:545372/1‑141
                                                                                                                                                 GACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCCTTCTTTACCACGT        >  1:1042128/1‑141
                                                                                                                                                     CTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCCTTCTTTACCACGTAGTA    >  2:637287/1‑141
                                                                                                                                                       TAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCCTTCTTTACCACGTAGTAAG  >  1:943766/1‑141
                                                                                                                                                                                                                                                                                                     
CTCATTCACCAGTTAAAGTTGTCGTTATTCCAACAGATGAAGAAAGTATGATTGCCCGTGATGTTATGACATTCGGTGGTTTAAAATAATTTTTAAATAAATATTAAGCGTCTATCTCCGCTACAATTATATGTA‑‑GGAGGTAGACGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1823013‑1822865
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagacgcttAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTTAACTGGTGAATGAGGATAGTTAATAAATCCTTCTTTACCACGTAGTAAG  >  CP000730/1822909‑1823048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.