| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1994322 = | NA (NA) | 3 (0.040) | 3/246 | NT | 25.9% | intergenic (‑429/‑64) | USA300HOU_1854/USA300HOU_1855 | hypothetical protein/IS1181 transposase |
| ? | CP000730 | 1994387 = | 9 (0.100) | coding (2/1362 nt) | USA300HOU_1855 | IS1181 transposase | |||||
GACGTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTtgtgta‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1994460‑1994322‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTGTAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTAATGCTGTACTAACGTATAAGCCTTCGGCCTGTTATTGTTGT > CP000730/1994387‑1994532 GACGTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTG > 1:998191/1‑141GACGTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTG < 1:602276/141‑1GACGTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTG < 2:808189/141‑1 ACGTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGT > 2:867789/1‑141 CGTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTG < 2:8055/141‑1 CGTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTG < 1:987152/141‑1 GTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTGT < 1:636669/141‑1 TCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTGTA > 1:547093/1‑141 TCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTGTA < 2:798846/141‑1 TCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTGTA < 1:222681/141‑1 TCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTGTA < 2:498048/141‑1 TCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTttaatacacaa < 1:808963/141‑12 TTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTttaatacacaaaa < 2:54598/141‑14 ACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTGTAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGAC > 1:10799/1‑141 GGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTGTAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAA > 2:337102/1‑128 GGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTTGTGTAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAA < 1:337102/128‑1 TGTGTAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTACTGCTGTACTAACGTATAAGCCTTCGGCCTGTTATT > 2:949203/1‑141 GTGTAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTAATGCTGTACTAACGTATAAGCCTTCGGCCTGTTATTG < 1:585933/141‑1 GTAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTAATGCTGTACTAACGTATAAGGCTTCGGCCTGTTATTGTT > 2:907072/1‑141 GTAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTAATGCTGTACTAACGTATAAGCCTTCGGCCTGTTATTGTT > 1:624539/1‑141 GTAATGATACCTTAGAATTACTAAGAACAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTAATGCTGTACTAACGTATAAGCCTTCGGCCTGTTATTGTT > 2:528597/1‑141 TAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTAATGCTGTACTAACGTATAAGCCTTCGGCCTGTTATTGTTG < 1:932999/141‑1 AATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTAATGCTGTACTAACGTATAAGCCTTCGGCCTGTTATTGTTGT > 2:706749/1‑141 GACGTCAATTTCTTGGTTTATATATTTTATATTTTCATCTTTTATTCTTAGTAATTCTAAGGTATCATTACACATAGGCGCACTTGTCTCCTTTAGTTTGGGTTTGGTCACTTTAAATTATAGAGGCAATTGCGCTTTTtgtgta‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1994460‑1994322‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTGTAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAACCAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTAATGCTGTACTAACGTATAAGCCTTCGGCCTGTTATTGTTGT > CP000730/1994387‑1994532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |