| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2008942 = | 88 (0.990) | 4 (0.050) | 4/230 | NT | 5.4% | intergenic (+70/+121) | ygaE/ygaD | hypothetical membrane protein/ABC superfamily ATP binding cassette transporter, membrane protein |
| ? | CP000730 | 2008991 = | 63 (0.800) | intergenic (+119/+72) | ygaE/ygaD | hypothetical membrane protein/ABC superfamily ATP binding cassette transporter, membrane protein | |||||
GCATTTATATAGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2009090‑2008942‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTATATAAATGCTCGTAAGCACCTTGTTTTGCAATCAATTCACGATGCG > CP000730/2008991‑2009127 GCATTTATATAGCATTCAAAACTTATAAAGGATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTAC < 2:678126/141‑1 CATTTATATAGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACT < 1:750362/141‑1 TTTATATAGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGC < 2:304019/141‑1 TTATATAGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCT > 1:258948/1‑141 TATATAGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGATAATAATCTTACTGCTT > 1:604020/1‑141 TATATAGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTT > 1:868105/1‑141 TATATAGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTT > 2:368200/1‑141 TATATAGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTT > 1:1071257/1‑141 TATAGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTT > 1:531278/1‑141 TATAGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTT > 2:1043127/1‑141 TATAGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTT > 1:93921/1‑141 ATAGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTT < 1:681354/141‑1 GTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAA > 1:1041351/1‑109 GTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAA < 2:1041351/109‑1 AGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTATATAAATGCTCG > 2:638705/1‑141 ATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTATATAAATGCTCGTAAG > 1:747337/1‑141 TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTATATAAATGCTCGTAAGCACCTTGTTTTGCAATCAAT > 1:696038/1‑141 TACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTATATAAATGCTCGTAAGCACCTTGTTTTGCAATCAATTCA > 1:407139/1‑141 TACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTATATAAATGCTCGTAAGCACCTTGTTTTGCAATCAATTCA < 1:820476/141‑1 TTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTATATAAATGCTCGTAAGCACCTTGTTTTGCAATCAATTCACGATGCG < 1:804993/141‑1 GCATTTATATAGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2009090‑2008942‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTATATAAATGCTCGTAAGCACCTTGTTTTGCAATCAATTCACGATGCG > CP000730/2008991‑2009127 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |