New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2252658 =	94 (1.060)	5 (0.060)	4/246	NT	5.5%	intergenic (+94/+58)	luxS/USA300HOU_2124	S‑ribosylhomocysteine lyase/hypothetical membrane protein
	?	CP000730	2252704 =	82 (0.970)					intergenic (+140/+12)	luxS/USA300HOU_2124	S‑ribosylhomocysteine lyase/hypothetical membrane protein

TTTAGGAGATAAACAATTGCCAACATGGCAACTATATTTAAGGTTACCTATGCAGTTCGTGTTAATGGGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2252803‑2252658 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatttATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTTATCTCCTAAAGGTAACTTTTTAACTGCCATATAGAT  >  CP000730/2252704‑2252829                                                                                                                                                                                                                                                                                  TTTAGGAGATAAACAATTGCCAACATGGCAACTATATTTAAGGTTACCTATGCAGTTCGTGTTAATGGGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTC                                                                                                                                     >  2:174318/1‑141  TTAGGAGATAAACAATTGCCAACATGGCAACTATATTTAAGGTTACCTATGCAGTTCGTGTTAATGGGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCG                                                                                                                                    <  1:940875/141‑1  TTAGGAGATAAACAATTGCCAACATGGCAACTATATTTAAGGTTACCTATGCAGTTCGTGTTAATGGGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCG                                                                                                                                    <  1:819440/141‑1     GGAGATAAACAATTGCCAACATGGCAACTATATTTAAGGTTACCTATGCAGTTCGTGTTAATGGGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATT                                                                                                                                 >  2:784914/1‑141                                                                                                       ATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTTATCTCCT                               >  2:496441/1‑141                                                                                                       ATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTTATCTCCT                               >  2:496667/1‑141                                                                                                        TCGGACAAATGTTAAAGATTCTACTTTTTCATTTGTTCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTTATCTCCTA                              >  1:825099/1‑141                                                                                                         CGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTTATCTCCTAA                             >  1:127429/1‑141                                                                                                                                    TCATTTGTTCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTTATCTCCTAAAGGTAACTTTTTAACTGCCATATAGAT  >  1:92016/1‑141                                                                                                                                                                                                                                                                                  TTTAGGAGATAAACAATTGCCAACATGGCAACTATATTTAAGGTTACCTATGCAGTTCGTGTTAATGGGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2252803‑2252658 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatttATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTTATCTCCTAAAGGTAACTTTTTAACTGCCATATAGAT  >  CP000730/2252704‑2252829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.