New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2676550	84 (0.960)	4 (0.050) +TTAG	4/248	NT	4.7%	intergenic (‑22/+25)	ilvB2/cidB	pyruvate oxidase/hypothetical membrane protein
	?	CP000730	2676551 =	84 (0.950)					intergenic (‑23/+24)	ilvB2/cidB	pyruvate oxidase/hypothetical membrane protein
Rejected: Frequency below/above cutoff threshold.

CGTAAACTATCGACTACTGCGTCGATTGAGTCTCCTGGAATACCATACAAGTGATCTATATCCCATGCTTGTAATGCTTTAACTAATGCTTCATTTGCTTTTATTTTTGCCATTATTACTAATAGCCTCCCTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2676416‑2676550 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTCTATCATTTTAAATATCTAAATTAATAGAATAATAAAATTAGAACAGGTATTAACACTGAACTAATAACTGCAGTTAAAATCATCCCAATTGAACTAAATGCACCGGATTCAATATCCATTTCTAGT  >  CP000730/2676551‑2676680                                                                                                                                        ||||                                                                                                                                   CGTAAACTATCGACAACTGCGTCGATTGAGTCTCCTGGAATACCATACAAGTGATCTATATCCCATGCTTGTAATGCTTTAACTAATGCTTCATTTGCTTTTATTTTTGCCATTATTACTAATAGCCTCCCTTTCTTAGTG                                                                                                                                  >  2:193398/1‑141                       CGATTGAGTCTCCTGGAATACCATACAAGTGATCTATATCCCATGCTTGTAATGCTTTAACTAATGCTTCATTTGCTTTTATTTTTGCCATTATTACTAATAGCCTCCCTTTCTTAGTGTCTATCATTTTAAATATCTAAA                                                                                                            >  1:164988/1‑141                                        ATACCATACAAGTGATCTATATCCCATGCTTGTAATGCTTTAACTAATGCTTCATTTGCTTTTATTTTTGCCATTATTACTAATAGCCTCCCTTTCTTAGTGTCTATCATTTTAAATATCTAAATTAATAGAATAATAAAA                                                                                           <  1:443276/141‑1                                                                           TGCTCTAACGAATGCTTCATTTGCTTTTATTGTGGCCATTATTACTAATAGTCTCCCTGTCTTAGTGTCTATCATTTTAAATATCTAAATTAATAGAATAATAAAATTAGAACAGGTATTAACACTGAACTAATAACTGCA                                                        <  1:321992/141‑1                                                                                                                                 CCCTTTCTTAGTGTCTATCATTTTAAATATCTAAATTAATAGAATAATAAAATTAGAACAGGTATTAACACTGAACTAATAACTGCAGTTAAAATCATCCCAATTGAACTAAATGCACCGGATTCAATATCCATTTCTAGT  >  1:825013/1‑141                                                                                                                                        ||||                                                                                                                                   CGTAAACTATCGACTACTGCGTCGATTGAGTCTCCTGGAATACCATACAAGTGATCTATATCCCATGCTTGTAATGCTTTAACTAATGCTTCATTTGCTTTTATTTTTGCCATTATTACTAATAGCCTCCCTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2676416‑2676550 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTCTATCATTTTAAATATCTAAATTAATAGAATAATAAAATTAGAACAGGTATTAACACTGAACTAATAACTGCAGTTAAAATCATCCCAATTGAACTAAATGCACCGGATTCAATATCCATTTCTAGT  >  CP000730/2676551‑2676680

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.