| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 419,854 | G→A | 12.2% | intergenic (+72/+194) | rpsR → / ← USA300HOU_0390 | ribosomal protein S18/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 419,854 | 0 | G | A | 12.2% | 255.1 / 5.4 | 97 | intergenic (+72/+194) | rpsR/USA300HOU_0390 | ribosomal protein S18/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (50/33); new base A (2/12); total (52/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.59e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGTTGACTACAGCTATCAAACGTTCTCGTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTG > CP000730/419714‑419992 | aTGTTGACTACAGCTATCAAACGTTCTCGTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAgg > 1:727333/1‑141 (MQ=255)aTGTTGACTACAGCTATCAAACGTTCTCGTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAgg > 1:243232/1‑141 (MQ=255) gACTACAGCTATCAAACGTTCTCGTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCaaa > 2:216801/1‑141 (MQ=255) cTACAGCTATCAAACGTTCTCGTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCaaaaa > 1:962092/1‑141 (MQ=255) cAGCTATCAAACGTTCTCGTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGTCAAAAAAgg < 1:956571/141‑1 (MQ=255) cTATCAAACGTTCTCGTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGgatg > 2:285127/1‑141 (MQ=255) cAAACGTTCTCGTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGAtgt < 1:396717/141‑1 (MQ=255) cAAACGTTCTCGTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGAtgt < 1:877716/141‑1 (MQ=255) cAAACGTTCTCGTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGAtgt > 1:793240/1‑141 (MQ=255) aaaCGTTCTCGTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATTTAATATATTAT‑AACCCTCGTAGGCATAGGCTTATGGGGGA‑TTTTTTTATGTTTGGGATATAGAAAAGGGACAGAAAAgggcaaaaa < 1:727981/141‑8 (MQ=255) aaaCGTTCTCGTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATTTAATATATTAT‑AACCCTCGTAGGCATAGGCTTA‑TGGGGGATTTTTTTATGTTTGGGATATAGAAAAGGGACAGAAAAgggcaaaaa < 1:726149/141‑8 (MQ=255) aCGTTCTCGTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGaa > 2:275959/1‑141 (MQ=255) aCGTTCTCGTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGaa < 1:894999/141‑1 (MQ=255) aCGTTCTCGTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGaa > 1:728783/1‑141 (MQ=255) ttCTCGTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGt < 1:844281/141‑1 (MQ=255) cccGTCATATGTCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCACACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑CTTGGGCGATAGAAACAGAGACAACACGGATGACGTGAATGctt > 2:700297/3‑141 (MQ=255) aagacaaatGGAATTATTACCATATGTTAAAGAAGAACAATAATATATAATATATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAAAAAAAAAAAAAAAAAGGATGATGTGAATGtttt < 2:519261/134‑1 (MQ=255) cGTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTtg > 2:311897/1‑141 (MQ=255) cGTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTtg > 1:554329/1‑141 (MQ=255) cGTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTtg > 2:430962/1‑141 (MQ=255) gTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTtgt > 1:334027/1‑141 (MQ=255) tCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGCATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTtgtg > 2:421302/1‑141 (MQ=255) tatGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTc < 2:435245/141‑1 (MQ=255) ggCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGa < 1:381719/141‑1 (MQ=255) cATGATTACCATATGTTAAATAAGAACAATAATATATAATTTATGTGCAAACTCCGTAGGCATAGTCTTA‑CGTGGC‑TTTTTGTGT‑TTTGGTGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAAt > 2:542492/1‑141 (MQ=255) tattaCCATATGTTAAAGAAGAACAAGAAAATGTAATGTATTGTCAAACCCCGCAGGCATAGGCTTA‑CGGTGC‑TTTTTGTGT‑TTTGGGGTATAAAAAAAAAAAAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTg < 2:929757/141‑1 (MQ=255) ttaCCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTGCGGAATTTGca > 2:495094/1‑141 (MQ=255) ttaCAATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGca < 2:203690/141‑1 (MQ=255) aacATATGTAAAAAAAGAACAATAATATAAAATTTATTGTCAAACCCCATAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAAAAAAAAAAAAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGcaca < 2:539211/139‑1 (MQ=255) aCCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGcaca > 2:843373/1‑141 (MQ=255) atatGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTTTGT‑TTTTTGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGTACAAAg > 2:967227/1‑141 (MQ=255) atGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGat > 2:1019193/1‑141 (MQ=255) gTTAAAGAAGAAAAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAAAACAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGatat < 2:456206/141‑1 (MQ=255) ttAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATg > 1:653248/1‑141 (MQ=255) ttAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATg > 1:458333/1‑141 (MQ=255) aaaaaaaaACAAAAAAAAAGAAGTTAATGACAAACCCCGTAGGCGTAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAAAAAAAAAAAAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGtt < 2:482286/141‑1 (MQ=255) aaaGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGtt > 1:697850/1‑141 (MQ=255) aagaagAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGttt > 1:527424/1‑141 (MQ=255) agaaAAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGA‑TTTGGGGTATAGAAAAAGAGAAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTatat < 2:884941/141‑1 (MQ=255) aaCAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTg < 1:600240/141‑1 (MQ=255) aaCAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTg > 2:834274/1‑141 (MQ=255) cAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCa > 1:521761/1‑141 (MQ=255) aataatATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCaa > 1:382864/1‑141 (MQ=255) aataTATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCaaaaa > 2:696146/1‑141 (MQ=255) aataTATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCaaaaa > 1:147771/1‑141 (MQ=255) tatataATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAaata < 1:883527/141‑1 (MQ=255) taaaagtgagatgcAAACCGCGTAAGTAAAGGATTA‑AGGGGC‑TGTTTGTGT‑TTTGGGGAATAGAAAAAAAAAAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAaataat < 2:10111/128‑1 (MQ=255) aaaaaTTTATTGTCAAACCCCGTAGGCATAGGCTTA‑AGGGGC‑TTTTTGTGT‑TTTGGGGTATAAAAAAAAAAAAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAaataat < 2:61279/138‑1 (MQ=255) taATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAatat < 1:638412/141‑1 (MQ=255) caaaacacaaaaatccccGTAAACATAATCTTA‑CGAGAC‑TTTTTGTAT‑TTTAGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCAGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATg < 2:803052/127‑1 (MQ=255) aaTTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATg < 1:670222/141‑1 (MQ=255) aTTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGACAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCACAAATAATATGAAttt > 1:837292/1‑141 (MQ=255) ttGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTa > 2:838671/1‑141 (MQ=255) gTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGa > 1:276923/1‑141 (MQ=255) tCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGAt > 1:775377/1‑141 (MQ=255) cAAACACCTTAGGAAGAGGCTTA‑CGGAAC‑TTTTTGTGT‑TTTGGAGTATAGAAAAAAAGAAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGAta < 2:562232/141‑2 (MQ=255) aaaCCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGc > 2:264233/1‑141 (MQ=255) aaaCCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGc < 1:413424/141‑1 (MQ=255) aaCCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCa > 2:346125/1‑141 (MQ=255) aCCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCAt < 2:259673/141‑1 (MQ=255) ccGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATaaa > 1:683530/1‑141 (MQ=255) gTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATaaaaa > 2:709842/1‑141 (MQ=255) gTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATaaaaa > 1:238029/1‑141 (MQ=255) gTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATaaaaa > 2:141055/1‑141 (MQ=255) aGGCATAGGCTTA‑CGGGGC‑ATTTTGGGT‑TTTGGGGTATCGAAAAAGAGCAAAAAAGGACGATGTGAATGTTTTGTGTTCGGAATTGGCACAACGATATGTTTATATTCCAAAAATAGTATGAATACAGATGCATcaaaaaa > 1:590766/1‑141 (MQ=255) agcctatgcctA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAg > 2:190072/11‑141 (MQ=255) gCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGa > 1:160866/1‑141 (MQ=255) cctatgcctA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGaa > 2:139123/9‑141 (MQ=255) cATAGGCTTA‑AGGGGC‑TTTTTGTGT‑TTTGGGGTATACAAAAAGGGCAAAAAAGGATGATGTGAAAGTTTTGTCTTCGGAACTTGCACAACGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGaa < 1:542492/141‑1 (MQ=255) tAGGCTTA‑CGGGGC‑TTTTTTTTT‑TTTTTTTTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACt > 2:1055583/1‑141 (MQ=255) gcctA‑CGGGGT‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACg > 1:1087047/4‑141 (MQ=255) gCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACg < 1:27199/141‑1 (MQ=255) ttA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTATAAATTGAAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCa < 2:334027/141‑1 (MQ=255) tA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGAGAAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCAt < 2:205623/141‑1 (MQ=255) a‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCAtt > 2:216350/1‑141 (MQ=255) cGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCAttt > 2:325858/1‑141 (MQ=255) gggC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGAAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTta < 2:558386/141‑1 (MQ=255) agC‑TTTATGTGT‑TTAGGGGTATAGAAAAAAAAAAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATAATGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTtaa < 2:85286/140‑1 (MQ=255) c‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTtaaat < 1:297072/141‑1 (MQ=255) tttttGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAGAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTtaaata < 1:1004675/141‑1 (MQ=255) tttttGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAAAATAAATAAAAAAAAAAAGAACTACGCATTTtattta < 2:898465/141‑5 (MQ=255) ttttGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTtaaataa < 1:249306/141‑1 (MQ=255) ttttGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATAAAAAAAAAAAAATAAAAAAAGAACTACGCATTTtaaataa < 2:243232/141‑1 (MQ=255) ttGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTTAAATaaaa > 1:101868/1‑141 (MQ=255) gtgt‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTTAAATAAAATg > 1:241221/1‑141 (MQ=255) gt‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTTAAATAAAATGCa > 1:19117/1‑141 (MQ=255) gt‑TTTGGGGTATAGAAAAAGAGAAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTTAAATAAAATGCa < 2:435673/141‑1 (MQ=255) t‑tttGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTTAAATAAAATGCAt < 2:687064/141‑1 (MQ=255) tttttttataGAAAAAGGGCAAAAAAGGTTGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTTTTTTTCATTTATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTTAAATAAAATGCATAg > 2:937886/7‑141 (MQ=255) tGGGGTATAGAAAAAGGGAAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTTAAATAACATGCATAGc < 1:954599/141‑1 (MQ=255) ggggTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTTAAATAAAATGCATAGct < 2:45502/141‑1 (MQ=255) tataGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTTAAATAAAATGCATAGCtcttc < 1:598234/141‑1 (MQ=255) ataGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTTAAATAAAATGCATAGCtcttct < 1:1019193/141‑1 (MQ=255) aaaaaaGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTTAAATAAAATGCATAGCTCTTCtttt < 2:551789/140‑1 (MQ=255) aaaaGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTTAAATAAAATGCATAGCTCTTCtttttt > 2:249115/1‑140 (MQ=255) aaaaGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTc > 2:1030273/1‑141 (MQ=255) aaaGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGGTGCATAAAAAAAGAACTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCt < 2:358364/141‑1 (MQ=255) aaaGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCt > 2:918698/1‑141 (MQ=255) aGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTATATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTg > 2:1002410/1‑141 (MQ=255) | ATGTTGACTACAGCTATCAAACGTTCTCGTCATATGGCATTATTACCATATGTTAAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGCTTA‑CGGGGC‑TTTTTGTGT‑TTTGGGGTATAGAAAAAGGGCAAAAAAGGATGATGTGAATGTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAACTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTG > CP000730/419714‑419992 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |