BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	631,341	T→C	5.4%	I205I (ATT→ATC)	USA300HOU_0566 →	possible phosphatase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	631,341	0	T	C	5.4%	330.9 / 6.9	112	I205I (ATT→ATC)	USA300HOU_0566	possible phosphatase
Reads supporting (aligned to +/- strand): ref base T (52/53); new base C (3/3); total (56/56)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.20e-01

Only 100 of 121 total aligned reads displayed.

AATAGCCAACAAACGGTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGAATTTAAAATAAATATTTATT  >  CP000730/631201‑631481

 aTAGCCAACAAACGGTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTttattatta                                                                                                                                             <  1:991088/141‑1 (MQ=255)

 aTAGCCAACAAACGGTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTttattatta                                                                                                                                             <  1:687046/141‑1 (MQ=255)

    gCCAACAAACGGTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATg                                                                                                                                          >  2:402973/1‑141 (MQ=255)

            aCGGTGTATATTGGTGATTCAACGCTTGATGTTTAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCa                                                                                                                                  >  1:657985/1‑141 (MQ=255)

              ggTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGAACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGa                                                                                                                                >  1:333611/1‑141 (MQ=255)

                tgtATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGaaa                                                                                                                              <  1:697326/141‑1 (MQ=255)

                  tataTTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAAtt                                                                                                                            <  1:557105/141‑1 (MQ=255)

                    tatTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTaa                                                                                                                          <  2:414286/141‑1 (MQ=255)

                    tatTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTaa                                                                                                                          <  2:171511/141‑1 (MQ=255)

                     atTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAAt                                                                                                                         <  2:42776/141‑1 (MQ=255)

                     atTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAAt                                                                                                                         <  2:2842/141‑1 (MQ=255)

                     atTGGTGATTCAACATTTGATGTTGAGATGGCGCAACATGCTGGTGTACCATCTGCAGCAGTAACATGGGGAGCACATGATGCAAGGTCATTACTTCATTCAAATCCAGATTTTATAATCAATGATCCATCAGAAATTAAt                                                                                                                         >  1:323824/1‑141 (MQ=255)

                               cAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGtattat                                                                                                               >  1:824638/1‑141 (MQ=255)

                               cAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGtattat                                                                                                               >  2:728836/1‑141 (MQ=255)

                                 aCGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATaa                                                                                                             >  1:843424/1‑141 (MQ=255)

                                  cGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATaaa                                                                                                            >  1:905878/1‑141 (MQ=255)

                                   gTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATaaaa                                                                                                           >  2:872186/1‑141 (MQ=255)

                                     ttGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACt                                                                                                         >  2:674651/1‑141 (MQ=255)

                                     caaacgTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGCCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACt                                                                                                         >  1:976686/6‑141 (MQ=255)

                                       gATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTg                                                                                                       >  1:670225/1‑141 (MQ=255)

                                       gATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTg                                                                                                       >  1:670069/1‑141 (MQ=255)

                                       gATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTg                                                                                                       >  1:520968/1‑141 (MQ=255)

                                        aTGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGt                                                                                                      >  1:384944/1‑141 (MQ=255)

                                        aTGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGt                                                                                                      <  1:328668/141‑1 (MQ=255)

                                        aTGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGt                                                                                                      <  2:1080832/141‑1 (MQ=255)

                                        aTGTTGAGAGGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGt                                                                                                      <  2:298501/141‑1 (MQ=255)

                                         tGTTGAGATGGCGCAACATGCTGGTGTACCATCTGCAGCAGTAACATGGGGAGCACATGATGCAAGGTCATTACTTCATTCAAATCCAGATTTTATAATCAATGATCCATCAGAAATTAATACAGTATTATAAAATTTGtt                                                                                                     <  1:174183/141‑1 (MQ=255)

                                         tGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGtt                                                                                                     <  1:625347/141‑1 (MQ=255)

                                         tGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGtt                                                                                                     >  1:220730/1‑141 (MQ=255)

                                         tGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGtt                                                                                                     >  1:353849/1‑141 (MQ=255)

                                          gTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAGTGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTa                                                                                                    <  2:215115/141‑1 (MQ=255)

                                              agaTGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAAc                                                                                                >  1:766330/1‑141 (MQ=255)

                                                   gCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAgaga                                                                                           >  1:1058805/1‑141 (MQ=255)

                                                   gCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAgaga                                                                                           >  1:397712/1‑141 (MQ=255)

                                                    cacaACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGaa                                                                                          <  2:611691/141‑1 (MQ=255)

                                                       aaCGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATAc                                                                                       >  2:1069825/1‑141 (MQ=255)

                                                          gTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCAt                                                                                    <  1:765385/141‑1 (MQ=255)

                                                           tGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATg                                                                                   <  2:291902/141‑1 (MQ=255)

                                                            gCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATgg                                                                                  <  2:801199/141‑1 (MQ=255)

                                                            gCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATgg                                                                                  <  2:64944/141‑1 (MQ=255)

                                                             cTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGt                                                                                 >  2:293750/1‑141 (MQ=255)

                                                             cTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGt                                                                                 <  1:179614/141‑1 (MQ=255)

                                                              tGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGtt                                                                                <  2:342690/141‑1 (MQ=255)

                                                              tGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGtt                                                                                >  1:76596/1‑141 (MQ=255)

                                                              tGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGtt                                                                                <  2:267160/141‑1 (MQ=255)

                                                                   tGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAAt                                                                           <  2:884267/141‑1 (MQ=255)

                                                                      aaTCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCa                                                                        <  1:251532/141‑1 (MQ=255)

                                                                       aTCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCat                                                                       >  2:708788/1‑141 (MQ=255)

                                                                        tCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCata                                                                      >  2:528400/1‑141 (MQ=255)

                                                                          tGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATAtt                                                                    <  1:250412/141‑1 (MQ=255)

                                                                            cagcagtaacatGGGGAGCACATGATGCAAGGTCATTACTTCATTCAAATCCAGATTTTATAATCAATGATCCATCAGAAATTAATACAGTATTATAAAATTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCa                                                                  <  1:772437/130‑1 (MQ=255)

                                                                            cAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCa                                                                  >  1:622386/1‑141 (MQ=255)

                                                                            cAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCa                                                                  <  1:578993/141‑1 (MQ=255)

                                                                             aGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCAt                                                                 >  2:720436/1‑141 (MQ=255)

                                                                              gCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATa                                                                >  2:310371/1‑141 (MQ=255)

                                                                                   cACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAatat                                                           >  2:227621/1‑141 (MQ=255)

                                                                                   cACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCACGGTTAAAATGCATATTCATAAatat                                                           >  2:485644/1‑141 (MQ=255)

                                                                                     cTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTa                                                         <  2:693359/141‑1 (MQ=255)

                                                                                           gTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATtat                                                   <  2:725043/141‑1 (MQ=255)

                                                                                                caTGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTa                                              <  2:144048/141‑1 (MQ=255)

                                                                                                  tgatgCAAGGACATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAAAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGa                                            <  2:147722/141‑1 (MQ=255)

                                                                                                   gatgCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGaa                                           <  2:2070/141‑1 (MQ=255)

                                                                                                    atgCAAGGTCATTACTTCCTTCAACTCCGGATTTTATTATAAATGATCCAGCAGACATTACTACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGCTAAAATGCATATTCATAACTATTAGATTCTACTTAGcaa                                          >  1:812454/1‑141 (MQ=255)

                                                                                                    atgCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGaaa                                          >  1:1008814/1‑141 (MQ=255)

                                                                                                      gCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAat                                                             <  2:554436/120‑1 (MQ=255)

                                                                                                      gCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAat                                                             >  1:554436/1‑120 (MQ=255)

                                                                                                      gCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAata                                        >  1:1001265/1‑141 (MQ=255)

                                                                                                      gCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAata                                        >  1:977164/1‑141 (MQ=255)

                                                                                                       cAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAatat                                       <  2:543763/141‑1 (MQ=255)

                                                                                                        aaGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATAtt                                      <  2:758666/141‑1 (MQ=255)

                                                                                                            tCATTACTTCATTCAAATCCTGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGc                                  <  2:605680/141‑1 (MQ=255)

                                                                                                            tCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGc                                  >  1:519754/1‑141 (MQ=255)

                                                                                                            tCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGc                                  >  2:585866/1‑141 (MQ=255)

                                                                                                            tCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGc                                  <  2:605814/141‑1 (MQ=255)

                                                                                                               ttACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCttt                               >  2:1025240/1‑141 (MQ=255)

                                                                                                                  cTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGa                            >  1:1019335/1‑141 (MQ=255)

                                                                                                                   ttcattcaAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGGTTTAGAt                           <  1:860156/141‑1 (MQ=255)

                                                                                                                   ttcattcaAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGAt                           >  1:276424/1‑141 (MQ=255)

                                                                                                                   ttcattcaAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGAt                           >  2:750881/1‑141 (MQ=255)

                                                                                                                     cattcaAATCCGGTTTTTATTATTTATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTa                         <  2:485937/141‑1 (MQ=255)

                                                                                                                     cattcaAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTa                         <  1:72778/141‑1 (MQ=255)

                                                                                                                       ttcaAATCCGGATTTTATTATTAATGATCCATCAGATATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGGAATATTTCGCTTTAGATTAgg                       <  2:605019/141‑1 (MQ=255)

                                                                                                                       ttcaAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAgg                       <  2:331351/141‑1 (MQ=255)

                                                                                                                        tcaAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGa                      <  1:728836/141‑1 (MQ=255)

                                                                                                                        tcaAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGa                      >  1:1015688/1‑141 (MQ=255)

                                                                                                                          aaaTCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGAAt                    <  1:318742/141‑1 (MQ=255)

                                                                                                                           aaTCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGAAtt                   <  2:220730/141‑1 (MQ=255)

                                                                                                                           aaTCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGAAtt                   >  2:491669/1‑141 (MQ=255)

                                                                                                                           aaTCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGAGTATACTTAGAAATATTTCGCTTTAGATTAGGAAtt                   <  1:29239/141‑1 (MQ=255)

                                                                                                                            aTCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGAAttt                  >  1:388724/1‑141 (MQ=255)

                                                                                                                            aTCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGAAttt                  >  2:905093/1‑141 (MQ=255)

                                                                                                                                ggATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGAATTTaaaa              <  2:483147/141‑1 (MQ=255)

                                                                                                                                ggATTTTATTAGTAATGATCCATCAGAGATGAATACCGTATGATGAAAGTTGTTAAGACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTATAAAGATTTCTCTTTAGATGAGGAATTTaaaa              >  2:542444/1‑141 (MQ=255)

                                                                                                                                agATTTTATAATCAATGATCCATCAGAAATTAATACAGTATTATAAAATTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACATAGAAATATTTCGCTTTAGATTAGGAATGTaaaa              >  2:1022537/2‑141 (MQ=255)

                                                                                                                                  aggataataataATGAGCCAACAGAAAATAATACCGTATTATAAAACTTGTTAAGACAGATAATACCATGGTTAAAATTCATACTCAGAAATAGTAAAACATACGGAGAAAGATTTCGCTTTAGAGTAGGAATTTAaaata            <  2:864373/131‑1 (MQ=255)

                                                                                                                                  aTTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGAATTTAaaata            <  1:708788/141‑1 (MQ=255)

                                                                                                                                      tattattaATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGAATTTAAaataaata        >  1:552266/1‑141 (MQ=255)

                                                                                                                                      tattattaATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGAATTTAAaataaata        <  1:130880/141‑1 (MQ=255)

                                                                                                                                           ttaATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGAATTTAAAATAAAtatttat   <  1:129975/141‑1 (MQ=255)

                                                                                                                                            taATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGAATTTAAAATAAAtatttatt  <  1:145474/141‑1 (MQ=255)

AATAGCCAACAAACGGTGTATATTGGTGATTCAACGTTTGATGTTGAGATGGCACAACGTGCTGGTATGCAATCTGCAGCTGTCACTTGGGGTGCACATGATGCAAGGTCATTACTTCATTCAAATCCGGATTTTATTATTAATGATCCATCAGAAATTAATACCGTATTATAAAACTTGTTAAAACAGAGAATACCATGGTTAAAATGCATATTCATAAATATTAGATTATACTTAGAAATATTTCGCTTTAGATTAGGAATTTAAAATAAATATTTATT  >  CP000730/631201‑631481

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`