Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	1,704,548	A→T	5.4%	D89E (GAT→GAA)	yqeI ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	1,704,548	0	A	T	5.4%	227.5 / 4.1	74	D89E (GAT→GAA)	yqeI	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (32/38);  new base T (2/2);  total (34/40)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.73e-01

GGTAAAAAATAAAATTCATCTGGCTGTAATTCATGAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCAAAGTTATTTTGTAGTACATGTACTTTAATCAATTCTCT  >  CP000730/1704409‑1704688                                                                                                                                             |                                                                                                                                             ggTAAAAAATAAAATTCATCTGGCTGTAATTCATGAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTtattat                                                                                                                                             >  2:689442/1‑141 (MQ=255)   tAAAAAATAAAATTCATCTGGCTGTAATTCATGAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCTTTATTATGGCAATTCAATTTCTTTATTATCt                                                                                                                                           >  2:1064713/1‑141 (MQ=255)   tAAAAAATAAAATTCATCTGGCTGTAATTCATGAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCt                                                                                                                                           <  2:389623/141‑1 (MQ=255)            aaatTCATCTGGCTGTAATTCATGAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATCTTTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATtc                                                                                                                                   >  2:862293/1‑141 (MQ=255)            aaatTCATCTGGCTGTAATTCATGAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATCTTTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATtc                                                                                                                                   >  2:45837/1‑141 (MQ=255)            aaatTCATCTGGCTGTAATTCATGAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATtct                                                                                                                                  >  1:692176/1‑141 (MQ=255)              atTCATCTGGCTGTAATTCATGAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTctct                                                                                                                                <  2:621819/141‑1 (MQ=255)                   tCTGGCTGTAATTCATGAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATaaa                                                                                                                           >  2:29203/1‑141 (MQ=255)                   tCTGGCTGTAATTCATGAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATaaa                                                                                                                           >  2:29146/1‑141 (MQ=255)                       gCTGTAATTCATGAAATACTTCGCTAGCTACTATCATATGTGCGGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCAc                                                                                                                       >  1:877108/1‑141 (MQ=255)                        cTGTAATTCATGAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTTTCTTTAGATTCTCTATAAATCACt                                                                                                                      >  1:952571/1‑141 (MQ=255)                            aaTTCATGAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCa                                                                                                                  <  2:982583/141‑1 (MQ=255)                             aTTCATGAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTTTCTTTAGATTCTCTATAAATCACTATCAt                                                                                                                 <  1:867894/141‑1 (MQ=255)                                cATGAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGa                                                                                                              >  2:350646/1‑141 (MQ=255)                                  tGAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATc                                                                                                            >  1:64708/1‑141 (MQ=255)                                  tGAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATc                                                                                                            >  1:64711/1‑141 (MQ=255)                                   gAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATcc                                                                                                           <  1:961795/141‑1 (MQ=255)                                   gAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATcc                                                                                                           <  1:735404/141‑1 (MQ=255)                                   gAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATcc                                                                                                           <  2:283847/141‑1 (MQ=255)                                   gAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATcc                                                                                                           <  1:91883/141‑1 (MQ=255)                                    aaaTACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGAAAGCTGTAGAGGACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCa                                                                                                          >  1:565697/1‑141 (MQ=255)                                         cTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCAc                                                                                                     >  2:1012900/1‑141 (MQ=255)                                         cTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCAc                                                                                                     <  1:392738/141‑1 (MQ=255)                                           tCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACtt                                                                                                   >  2:881882/1‑141 (MQ=255)                                           tCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACtt                                                                                                   >  2:598192/1‑141 (MQ=255)                                            cGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTg                                                                                                  >  1:538314/1‑141 (MQ=255)                                                agctaCTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACt                                                                                              <  2:434913/141‑1 (MQ=255)                                                 gctaCTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTa                                                                                             >  2:915859/1‑141 (MQ=255)                                                   tactaTCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAAt                                                                                           >  1:742364/1‑141 (MQ=255)                                                    actaTCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAAtt                                                                                          <  2:1015835/141‑1 (MQ=255)                                                     ctaTCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTTTCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTc                                                                                         <  1:1029909/141‑1 (MQ=255)                                                       aTCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACtcttttcc                                                                                       >  1:274208/1‑134 (MQ=255)                                                        tCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTTTCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACt                                                                                      >  2:668502/1‑141 (MQ=255)                                                          atatGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCTTTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTAt                                                                                    >  2:896853/1‑141 (MQ=255)                                                           tatGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATg                                                                                   <  2:998243/141‑1 (MQ=255)                                                                gCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGGACTATC‑TTTTACATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAg                                                                              >  1:947279/1‑141 (MQ=255)                                                                 cAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGc                                                                             >  2:1067904/1‑141 (MQ=255)                                                                   gTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCtt                                                                           >  1:57131/1‑141 (MQ=255)                                                                   gTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAAGTCatttactaaacctt                                                                           >  2:27405/1‑128 (MQ=255)                                                                    tATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTc                                                                          <  2:202706/141‑1 (MQ=255)                                                                      tGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGc                                                                        >  1:963209/1‑141 (MQ=255)                                                                        gATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCtt                                                                      >  1:454547/1‑141 (MQ=255)                                                                        gATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCtt                                                                      <  1:319957/141‑1 (MQ=255)                                                                                tAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTc                                                              <  2:620246/141‑1 (MQ=255)                                                                                  aaCTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAg                                                            <  2:928828/141‑1 (MQ=255)                                                                                   aCTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGCTCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGc                                                           <  1:546170/141‑1 (MQ=255)                                                                                    cTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCt                                                          <  2:309260/141‑1 (MQ=255)                                                                                    cTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCt                                                          <  2:21821/141‑1 (MQ=255)                                                                                      gACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTaa                                                        <  2:561922/141‑1 (MQ=255)                                                                                       aCCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAAt                                                       <  2:587179/141‑1 (MQ=255)                                                                                       aCCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAAt                                                       <  2:119048/141‑1 (MQ=255)                                                                                          gccgTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTCTCAGCTAATTCt                                                    <  2:1042583/141‑1 (MQ=255)                                                                                              tAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACGTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCttttt                                                <  2:56551/141‑1 (MQ=255)                                                                                              tAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATACAATAACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCttttt                                                >  2:826079/1‑141 (MQ=255)                                                                                               aaaGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCtttttt                                               <  1:66060/141‑1 (MQ=255)                                                                                               aaaGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCtttttt                                               <  1:137699/141‑1 (MQ=255)                                                                                                     cTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTatcatc                                         >  1:939584/1‑141 (MQ=255)                                                                                                     cTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTatcatc                                         <  1:129450/141‑1 (MQ=255)                                                                                                     cTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTatcatc                                         <  1:129451/141‑1 (MQ=255)                                                                                                       aTC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCaa                                       <  1:1012900/141‑1 (MQ=255)                                                                                                        tC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCaaa                                      <  1:29146/141‑1 (MQ=255)                                                                                                        tC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCaaa                                      <  1:29203/141‑1 (MQ=255)                                                                                                         c‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCAAAg                                     >  1:1075921/1‑141 (MQ=255)                                                                                                           tttttCATTATTATCGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCAAAGt                                    <  1:230636/141‑1 (MQ=255)                                                                                                                cATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCAAAGTTAttt                               <  1:363230/141‑1 (MQ=255)                                                                                                                       atGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCAAAGTTATTTTgtagta                        <  2:496516/141‑1 (MQ=255)                                                                                                                          gCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCAAAGTTATTTTGTAGTACAt                     <  2:967765/141‑1 (MQ=255)                                                                                                                           caattcaattTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCAAAGTTATTTTGTAGTACATg                    <  1:877724/141‑1 (MQ=255)                                                                                                                           caattcaattTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCAAAGTTATTTTGTAGTACATg                    <  1:877761/141‑1 (MQ=255)                                                                                                                             attcaattTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCAAAGTTATTTTGTAGTACATGTa                  >  1:724570/1‑141 (MQ=255)                                                                                                                              ttcaattTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCAAAGTTATTTTGTAGTACATGTAc                 >  2:535565/1‑141 (MQ=255)                                                                                                                                caattTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCAAAGTTATTTTGTAGTACATGTACtt               <  2:265265/141‑1 (MQ=255)                                                                                                                                 aattTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCAAAGTTATTTTGTAGTACATGTACttt              >  1:186071/1‑141 (MQ=255)                                                                                                                                   tttCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCAAAGTTATTTTGTAGTACATGTACTTTaa            >  1:779389/1‑141 (MQ=255)                                                                                                                                    ttCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGGTCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCAAAGTTATTTTGTAGTACATGTACTTTAAt           <  2:59509/141‑1 (MQ=255)                                                                                                                                          attatCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCAAAGTTATTTTGTAGTACATGTACTTTAATCAATtc     >  1:196900/1‑141 (MQ=255)                                                                                                                                           ttatCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCAAAGTTATTTTGTAGTACATGTACTTTAATCAATtct    <  1:705413/141‑1 (MQ=255)                                                                                                                                             atCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCAAAGTTATTTTGTAGTACATGTACTTTAATCAATTctct  <  2:625798/141‑1 (MQ=255)                                                                                                                                             atCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCAAAGTTATTTTGTAGTACATGTACTTTAATCAATTctct  >  1:584128/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                             GGTAAAAAATAAAATTCATCTGGCTGTAATTCATGAAATACTTCGCTAGCTACTATCATATGTGCAGTATGGATAGGGTTAAACTGACCGCCGTAAAGTACTATC‑TTTTTCATTATTATGGCAATTCAATTTCTTTATTATCTTTAGATTCTCTATAAATCACTATCATAGATCCAATCACTTGCACTAATTCACTATGAGTAGCTTCGCTTAATGTTTCAGCTAATTCTTTTTTATCATCAAAGTTATTTTGTAGTACATGTACTTTAATCAATTCTCT  >  CP000730/1704409‑1704688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑