| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 1,970,932 | A→T | 5.2% | intergenic (+121/‑612) | USA300HOU_1831 → / → USA300HOU_1832 | hypothetical protein/hypothetical membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 1,970,932 | 0 | A | T | 5.2% | 319.0 / 5.2 | 105 | intergenic (+121/‑612) | USA300HOU_1831/USA300HOU_1832 | hypothetical protein/hypothetical membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (45/53); new base T (4/3); total (49/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.03e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 112 total aligned reads displayed.
GAAACGAAATTTCTAAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGATTACGCTTTACTTA > CP000730/1970792‑1971072 | gAAACGAAATTTCTAAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTaa > 2:1033358/1‑141 (MQ=255) aaaCGAAATTTCTAAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTaaa > 2:186313/1‑141 (MQ=255) aCGAAATTTCTAAGTAGCAGGTTACGTTCTCGTTCACAACTGTTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAAc < 2:180234/141‑1 (MQ=255) aCGAAATTTCTAAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAAc < 1:427019/141‑1 (MQ=255) aCGAAACGTCTAAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAAc < 2:365511/141‑1 (MQ=255) cGAAATTTCTAAGTAGCACGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTTAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTATAACt > 1:338895/1‑141 (MQ=255) aaaTTTCTAAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCa > 1:339394/1‑141 (MQ=255) aaaTTTCTAAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCa < 1:1018265/141‑1 (MQ=255) aaTTTCTAAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTGTTTTTTAAAACTCaa > 1:900274/1‑141 (MQ=255) tAAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAAc > 2:1025130/1‑141 (MQ=255) aGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACtt > 2:341567/1‑141 (MQ=255) aGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGttt < 1:1027473/141‑1 (MQ=255) ggTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTa > 1:922924/1‑141 (MQ=255) ggTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTa > 1:176913/1‑141 (MQ=255) ggTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTa < 2:642984/141‑1 (MQ=255) ggTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTa > 1:109371/1‑141 (MQ=255) tcGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAg > 2:496999/1‑141 (MQ=255) tcGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAg > 1:22044/1‑141 (MQ=255) cGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTGTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAgg > 2:934687/1‑141 (MQ=255) gATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGa < 1:767512/141‑1 (MQ=255) cacaACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGa > 1:599830/1‑141 (MQ=255) cacaACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGa < 2:474114/141‑1 (MQ=255) tattaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAg > 1:400938/1‑141 (MQ=255) tattaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAg < 1:384344/141‑1 (MQ=255) attaGTAACAGCATATTTATTTTTTAAAATTAAATACCAAATGAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGt > 1:933982/1‑141 (MQ=255) taGTAACAGCATATTTATTTTTTAATATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTTTATTTTTTATGAATTTATTTTTACAAATTATAGTAAGCCATTTTTTGTAGttt > 2:788507/1‑139 (MQ=255) aGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAt > 2:33357/1‑141 (MQ=255) aGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAt > 1:392263/1‑141 (MQ=255) tAACAGCATATTTATTTTTTTAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTATAAATCAAATGAACTTATGTTTACAAATTACAGGAATACATCGTTTGTAGTGAttt < 2:340905/141‑1 (MQ=255) aaCAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAttt < 1:326690/141‑1 (MQ=255) aCAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTc < 1:186313/141‑1 (MQ=255) cAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAtttaag < 1:1002034/141‑4 (MQ=255) gCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCt < 2:139427/141‑1 (MQ=255) cATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATCTTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAATCAGACATTGATTGTAGTGAttttgggtt > 2:698522/1‑136 (MQ=255) tttaattTTAAAAAATAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAATTTAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAAt > 2:735437/1‑141 (MQ=255) ttttttAAAATTAAATGCCAAATAAACGAGATGACATCAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGcatgaaaaaga > 1:784703/1‑131 (MQ=255) tttttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCatat > 1:172642/1‑141 (MQ=255) tttttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCatat > 1:854454/1‑141 (MQ=255) ttttattttaaTGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTa > 2:871208/10‑141 (MQ=255) tAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTAt > 1:21615/1‑141 (MQ=255) aaaaTTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATg > 1:645379/1‑141 (MQ=255) aaaaTTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATg > 2:108270/1‑141 (MQ=255) aaTTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAGATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGaa < 2:1056976/141‑1 (MQ=255) ttAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAatt < 1:398694/141‑1 (MQ=255) aaTGCCGAATAAACGAGATGATATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAAAGTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAattgat < 2:890869/141‑1 (MQ=255) aaTGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAattgat < 2:24432/141‑1 (MQ=255) aTGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAattgatt > 1:1074531/1‑141 (MQ=255) aTGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAattgatt < 1:723497/141‑1 (MQ=255) aaaTAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGaaaa > 1:621703/1‑141 (MQ=255) aaaTAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGaaaa < 2:942411/141‑1 (MQ=255) aTAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACa < 2:777644/141‑1 (MQ=255) cGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCt < 2:31345/141‑1 (MQ=255) gagaTGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCtt > 2:202208/1‑141 (MQ=255) gagaTGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCtt > 1:793155/1‑141 (MQ=255) agaTGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTa < 1:288350/141‑1 (MQ=255) tGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGa < 2:176993/141‑1 (MQ=255) tGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATAAACTTATTTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGa < 1:972611/141‑1 (MQ=255) gACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAACCATTGCTTAGGAt > 2:706796/1‑141 (MQ=255) gACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGAt < 2:474383/141‑1 (MQ=255) gACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGAt < 2:724858/141‑1 (MQ=255) aCATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGAtt < 1:257006/141‑1 (MQ=255) tAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCAtt < 1:447110/141‑1 (MQ=255) aaa‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACGTTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATtgtg > 2:699080/1‑141 (MQ=255) aa‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTgtgt < 1:322084/141‑1 (MQ=255) a‑TTAGATATTTCTTGTCATCTCTTTTTTTTTTTTTAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGtt > 2:216341/1‑141 (MQ=255) a‑TTAGATATTTCTTGTCATCTCTTTTTTATATCTTAAATTAACTTATGATGGCAAATTCTATGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTAAAAACATTACTTAGGATTCATTGTCtt > 2:216327/1‑141 (MQ=255) a‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGtt < 1:260302/141‑1 (MQ=255) a‑TTAGATATTTCTTGTCAACTCGTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGtt < 1:555437/141‑1 (MQ=255) atatTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCt < 1:47646/141‑1 (MQ=255) atTTCTTGTCATCTCTTTTTTAAAACTCTAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTg > 2:697677/1‑141 (MQ=255) tttCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGc < 2:259415/141‑1 (MQ=255) tttCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGc < 1:135080/141‑1 (MQ=255) ttCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCa < 1:1033358/141‑1 (MQ=255) tCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCAc < 2:841068/141‑1 (MQ=255) tCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCAc < 2:340717/141‑1 (MQ=255) tCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCAc < 2:896368/141‑1 (MQ=255) tGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTCTCCTTGCACttt > 1:685821/1‑141 (MQ=255) tGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACttt > 1:829549/1‑141 (MQ=255) gTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTg < 2:513951/141‑1 (MQ=255) gTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTg < 2:514422/141‑1 (MQ=255) gTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTg > 1:798408/1‑141 (MQ=255) tCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGa > 1:659615/1‑141 (MQ=255) cATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGAt < 2:616233/141‑1 (MQ=255) cATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGAt < 1:1034021/141‑1 (MQ=255) cATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGAt < 1:1011298/141‑1 (MQ=255) cATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGAt > 1:178460/1‑141 (MQ=255) aTCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGAtt > 1:378266/1‑141 (MQ=255) ctTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGATTACGc < 1:1086600/141‑1 (MQ=255) ctTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGATTACGc < 1:318007/141‑1 (MQ=255) tttttAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGATTACGCtt < 2:359929/141‑1 (MQ=255) tttttAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGATTACGCtt > 1:6037/1‑141 (MQ=255) tttttAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGATTACGCtt > 2:60702/1‑141 (MQ=255) ttttATAACTCAAATGAACTTATGTTTACAAATTACAGGAATACATCGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGATTACGCttt < 2:338895/141‑1 (MQ=255) ttttAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGATTACGCttt > 2:578231/1‑141 (MQ=255) tttATAACTCAAATGAACTTATGTTTACAAATTACAGGAATACATCGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGATTACGCTTTa < 2:94253/141‑1 (MQ=255) tAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCAGATTTAGTAAGTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGATTACGCTTTACt > 1:214356/1‑141 (MQ=255) aaaaCTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGATTACGCTTTACtt > 1:734637/1‑141 (MQ=255) aaaCTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGATTACGCTTTACTTa > 1:595994/1‑141 (MQ=255) aaaCTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGATTACGCTTTACTTa < 1:344872/141‑1 (MQ=255) aaaCTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGATTACGCTTTACTTa < 2:959343/141‑1 (MQ=255) | GAAACGAAATTTCTAAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAA‑TTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATTGAAAACATTGCTTAGGATTCATTGTGTTATCCTTGCACTTTGATTACGCTTTACTTA > CP000730/1970792‑1971072 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |