Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 2,086,485 A→T 8.1% intergenic (‑375/+14) USA300HOU_1945 ← / ← USA300HOU_1946 hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007302,086,4850AT 8.1% 243.3 / 9.1 84intergenic (‑375/+14)USA300HOU_1945/USA300HOU_1946hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (33/43);  new base T (3/4);  total (37/47)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

GATATTTATAAAAACAAAAGATGTCGTTCATTTAACAATTTTCATATTAAACTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAAGAGCATACATTGCTTTTTGACCTGAAATTTTT  >  CP000730/2086347‑2086625
                                                                                                                                          |                                                                                                                                            
gATATTTATAAAAACAAAAGATGTCGTTCATTTAACAATTTTCATATTAAACTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTaaaa                                                                                                                                            <  1:225824/141‑1 (MQ=255)
    tttATAAAAACAAAAGATGTCGTTCATTTAACAATTTTCATATTAAACTTACTTTTTTCAATTCTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAgtgt                                                                                                                                        >  2:227745/1‑141 (MQ=255)
         aaaaaCAAAAGATGTCGTTCATTTAACAATTTTCATATTAAACTTTCTTTTTTAAATAAATTAATGTTTGATAATACTCTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCTTTTACGGGTGGttt                                                                                                                                   <  1:647831/141‑1 (MQ=255)
           aaaCAAAAGATGTCGTTCATTTAACAATTTTCATATTAAACTTACTTTTTTTAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGttttt                                                                                                                                 >  2:123485/1‑141 (MQ=255)
            aaCAAAAGATGTCGTTCATTTAACAATTTTCATATTAATCTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGtttttt                                                                                                                                <  2:127007/141‑1 (MQ=255)
            aaCAAAAGATGTCGTTCATTTAACAATTTTCATATTAAACTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGtttttt                                                                                                                                >  2:884554/1‑141 (MQ=255)
             aCAAAAGATGTCGTTCATTTAACAATTTTCATATTAAACTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCTTTTACGGGTGGttttaat                                                                                                                               <  2:81171/141‑4 (MQ=255)
              cAAAAGATGTCGTTCATTTAACAATTTTCATATTAAACTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTa                                                                                                                              >  1:718755/1‑141 (MQ=255)
                 aaGATGTCGTTCATTTAACAATTTTCATATTAAACTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAata                                                                                                                           >  2:684581/1‑141 (MQ=255)
                  aGATGTCGTTCATTTAACAATTTTCATATTAAACTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCTTTTACGGGTGGttttacatatct                                                                                                                          >  2:807995/1‑133 (MQ=255)
                  aGATGTCGTTCATTTAACAATTTTCATATTAAACTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAatat                                                                                                                          >  1:427099/1‑141 (MQ=255)
                   gATGTCGTTCATTTAACAATTTTCATATTAAACTTACTTTTTTTATTTCTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATAtt                                                                                                                         >  2:73857/1‑141 (MQ=255)
                   gATGTCGTTCATTTAACAATTTTCATATTAAACTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATAtt                                                                                                                         <  2:836588/141‑1 (MQ=255)
                     tGTCGTTCATTTAACAATTTTCATATTAAACTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTa                                                                                                                       >  1:1005927/1‑141 (MQ=255)
                         gTTCATTTAACAATTTTCATATTAAACTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACttt                                                                                                                   >  1:796739/1‑141 (MQ=255)
                               ttAACAATTTTCATATTAAACTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTg                                                                                                             >  1:364898/1‑141 (MQ=255)
                                 aaCAATTTTCATATTAAACTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCt                                                                                                           <  1:350916/141‑1 (MQ=255)
                                  aCAATTTTCATATTAAACTTACTTTTTTTTTTTTTTTTTTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATTTTATCTAGAAAATTAATACCACCCGTACTTGGGTGGTTTTTTTAATTTTTACTTTTTTGTGttt                                                                                                          >  2:758465/1‑141 (MQ=255)
                                  aCAATTTTCATATTAAACTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCtt                                                                                                          >  1:400649/1‑141 (MQ=255)
                                    aaTTTTCATATTAAACTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCg                                                                                                        <  1:672105/141‑1 (MQ=255)
                                        ttCATATTAAACTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCaa                                                                                                    <  1:1043182/141‑1 (MQ=255)
                                        ttCATATTAAACTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTACAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCaa                                                                                                    <  1:381814/141‑1 (MQ=255)
                                            tatTAAACTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTc                                                                                                <  1:368472/141‑1 (MQ=255)
                                                 aaCTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTATAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTtat                                                                                           <  2:525217/141‑1 (MQ=255)
                                                 aaCTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTtata                                                                                          <  2:414937/141‑1 (MQ=255)
                                                     tacttTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAAt                                                                                       <  1:809707/141‑1 (MQ=255)
                                                         tttttCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCttt                                                                                   <  1:309008/141‑1 (MQ=255)
                                                          ttttttatatTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGTTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCtttt                                                                                  >  2:922848/7‑141 (MQ=255)
                                                            ttCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTATATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGa                                                                                <  2:231630/141‑1 (MQ=255)
                                                               aaTACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGt                                                                             <  2:448127/141‑1 (MQ=255)
                                                                aTACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGtt                                                                            <  1:528274/141‑1 (MQ=255)
                                                                 tACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATAtt                                                                                                                         <  1:546642/95‑1 (MQ=255)
                                                                 tACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATAtt                                                                                                                         >  2:546642/1‑95 (MQ=255)
                                                                 tACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTg                                                                           <  1:631977/141‑1 (MQ=255)
                                                                 tACTTTATTGTTTACCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCTTTTACGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCATTATAAATCTTTTGAAGTTg                                                                           >  2:1022747/1‑141 (MQ=255)
                                                                    tttATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGata                                                                        >  1:512609/1‑141 (MQ=255)
                                                                     ttATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGatat                                                                       <  1:454018/141‑1 (MQ=255)
                                                                     ttATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGatat                                                                       <  2:255325/141‑1 (MQ=255)
                                                                     ttATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGatat                                                                       <  1:220405/141‑1 (MQ=255)
                                                                      tATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATAtt                                                                      <  2:456423/141‑1 (MQ=255)
                                                                      tATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATAtt                                                                      <  1:128919/141‑1 (MQ=255)
                                                                       aTTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATAttt                                                                     <  1:478318/141‑1 (MQ=255)
                                                                       aTTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATAttt                                                                     <  1:478907/141‑1 (MQ=255)
                                                                        ttGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGt                                                                                                       >  1:716920/1‑106 (MQ=255)
                                                                        ttGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGt                                                                                                       <  2:716920/106‑1 (MQ=255)
                                                                            ttGCCTATACTGTTTTATTTAAGAACACTTTTATCTTATCTAGAACATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAACGTCGTTTTACTTCTTTTGATGATGATATTTTGCtt                                                                >  2:184535/1‑141 (MQ=255)
                                                                             tGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTc                                                               >  1:747487/1‑141 (MQ=255)
                                                                              gCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCt                                                              <  1:769900/141‑1 (MQ=255)
                                                                              gCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCt                                                              <  2:284703/141‑1 (MQ=255)
                                                                              gCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCt                                                              <  2:526113/141‑1 (MQ=255)
                                                                                cTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGa                                                            >  1:768064/1‑141 (MQ=255)
                                                                                cTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGa                                                            >  2:782060/1‑141 (MQ=255)
                                                                                  ctaCTGTTTTATTTATGAACACTTTGATATTATCTAGAAAAGTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACa                                                          <  1:585285/140‑1 (MQ=255)
                                                                                   taCTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACAt                                                         <  2:151042/141‑1 (MQ=255)
                                                                                   taCTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACAt                                                         <  1:123485/141‑1 (MQ=255)
                                                                                      ttttttATTTATTAACACTTTTATATTATCTAGAAAATTAGAACCACTCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACAtttt                                                      <  2:1063983/139‑1 (MQ=255)
                                                                                       gTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTATTATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTc                                                     >  2:1022292/1‑141 (MQ=255)
                                                                                        ttttATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCt                                                    <  1:165220/141‑1 (MQ=255)
                                                                                         tttatttaTGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCtt                                                   >  2:1076385/1‑141 (MQ=255)
                                                                                            atttatGAACACTTTTATATTATCTAGAAAATTAAAACCACCCTTTTACGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCATTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTaaa                                                <  1:1022747/141‑1 (MQ=255)
                                                                                            atttatGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTaaa                                                <  1:1050866/141‑1 (MQ=255)
                                                                                             tttatGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAg                                               <  1:813640/141‑1 (MQ=255)
                                                                                               tatGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTc                                             <  1:492863/141‑1 (MQ=255)
                                                                                                 tGAACACTTTTATATTATCTAGAAAATTAAAACCACCCTTTTACGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCATTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCtt                                           >  1:506989/1‑141 (MQ=255)
                                                                                                     cacTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGa                                       >  1:824067/1‑141 (MQ=255)
                                                                                                      acTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGAc                                      <  1:338999/141‑1 (MQ=255)
                                                                                                        ttttATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACtt                                    <  1:46744/141‑1 (MQ=255)
                                                                                                           tataTTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAag                                 >  2:497672/1‑141 (MQ=255)
                                                                                                                 atCTAGAAAATTAAAACCACCCGTAAAAGGGTTGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAAGAGCATa                           <  2:975120/141‑1 (MQ=255)
                                                                                                                 atCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAAGAGCATa                           <  1:10700/141‑1 (MQ=255)
                                                                                                                  tCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAAGAGCATAc                          >  2:40636/1‑141 (MQ=255)
                                                                                                                  tCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAAGAGCATAc                          <  2:743009/141‑1 (MQ=255)
                                                                                                                         aaTTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAAGAGCATACATTGCtt                   >  1:652531/1‑141 (MQ=255)
                                                                                                                         aaTTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTATAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAAGAGCATACATTGCtt                   >  1:762844/1‑141 (MQ=255)
                                                                                                                          aTTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAAGAGCATACATTGCttt                  >  1:363796/1‑141 (MQ=255)
                                                                                                                          aTTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTGTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAAGAGCATACATTGCttt                  >  2:864521/1‑141 (MQ=255)
                                                                                                                             aaaaCCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAAGAGCATACATTGCTTTTTg               >  1:420575/1‑141 (MQ=255)
                                                                                                                              aaaCCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAAGAGCATACATTGCTTTTTGa              >  1:70580/1‑141 (MQ=255)
                                                                                                                                accaccCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAAGAGCATACATTGCTTTTTGAcc            <  1:288933/141‑1 (MQ=255)
                                                                                                                                accaccCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTGTATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAAGAGCATACATTGCTTTTTGAcc            <  2:217869/141‑1 (MQ=255)
                                                                                                                                   accCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAAGAGCATACATTGCTTTTTGACCTGa         >  1:540961/1‑141 (MQ=255)
                                                                                                                                    cccGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAAGAGCATACATTGCTTTTTGACCTGaa        <  2:674351/141‑1 (MQ=255)
                                                                                                                                    cccGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAAGAGCATACATTGCTTTTTGACCTGaa        <  2:1065259/141‑1 (MQ=255)
                                                                                                                                    cccGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAAGAGCATACATTGCTTTTTGACCTGaa        >  1:1075569/1‑141 (MQ=255)
                                                                                                                                       gTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAAGAGCATACATTGCTTTTTGACCTGAAAtt     >  1:764610/1‑141 (MQ=255)
                                                                                                                                          aaaGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAAGAGCATACATTGCTTTTTGACCTGAAAttttt  <  2:540961/141‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                            
GATATTTATAAAAACAAAAGATGTCGTTCATTTAACAATTTTCATATTAAACTTACTTTTTTCAATACTTTATTGTTTGCCTATACTGTTTTATTTATGAACACTTTTATATTATCTAGAAAATTAAAACCACCCGTAAAAGGGTGGTTTTTTTAATATTTACTTTTTAGTGCTTCGTCAATTTCGTTATAAATCTTTTGAAGTTGATATTTTGCTTCTGACATTTTCTTAAAGTCTTTTGACTTAAGAGCATACATTGCTTTTTGACCTGAAATTTTT  >  CP000730/2086347‑2086625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: