Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 2,119,733 A→G 5.9% I171I (ATT→ATC)  USA300HOU_1992 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007302,119,7330AG 5.9% 243.1 / 5.2 86I171I (ATT→ATC) USA300HOU_1992hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (43/37);  new base G (3/2);  total (46/40)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.88e-01

TGATATCTTTGTTAATCTGTTTTATCTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATTCATCA  >  CP000730/2119594‑2119871
                                                                                                                                           |                                                                                                                                          
tgatatctttgTTAATCTGTTTTATCTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCaa                                                                                                                                           >  1:1026450/1‑141 (MQ=255)
tgatatctttgTTAATCTGTTTTATCTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCaa                                                                                                                                           >  1:500684/1‑141 (MQ=255)
tgatacctttgTTAATCTGTTTTATCTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTACAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCTTCATCATTGATTGGTTTAGCaa                                                                                                                                           >  2:506729/1‑141 (MQ=255)
   tatctttgTTAATCTGTTTTATCTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAAttt                                                                                                                                        >  1:87956/1‑141 (MQ=255)
     tctttgTTATTCTGTTTTACCTTGTCCGTAACAATCTTTTTCTTTGTTTCAATTTTTTGATCTCCAATAATATTATTTAGTTCTTTAAATTCATCATTTGTTTTAATTACATCCGCATCATTGATTGGTTTAGCAATTTCa                                                                                                                                      <  1:857985/141‑1 (MQ=255)
     tctttgTTAATCTGTTTTATCTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCa                                                                                                                                      >  2:125614/1‑141 (MQ=255)
       tttgTTAATCTGTTTTATCTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATTACATCCTCATCATTGATTGGTTTAGCAATTTCaaa                                                                                                                                    >  2:126665/1‑141 (MQ=255)
       tttgTTAATCTGTTTTATCTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATAATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCaaa                                                                                                                                    >  1:920438/1‑141 (MQ=255)
           ttAATCTGTTTTATCTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAaacaac                                                                                                                                <  1:704196/141‑1 (MQ=255)
               tCTGTTTTATCTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAAc                                                                                                                            >  2:364506/1‑141 (MQ=255)
                cTGTTTTATCTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAAct                                                                                                                           >  1:465062/1‑141 (MQ=255)
                 tGTTTTATCTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAActt                                                                                                                          >  1:263161/1‑141 (MQ=255)
                   ttttATCTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAActtct                                                                                                                        <  2:921777/141‑1 (MQ=255)
                      tATCTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTCTCAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTCGCAATTTCAACCAACACACTTCTTCg                                                                                                                     >  2:591926/1‑141 (MQ=255)
                        tCTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGct                                                                                                                   >  1:649649/1‑141 (MQ=255)
                         cTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGctt                                                                                                                  >  1:148902/1‑141 (MQ=255)
                         cTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGctt                                                                                                                  >  1:148976/1‑141 (MQ=255)
                            gTCCGTAAGAATCTTTTTTTTTTTTTTTTTTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGCCATCCTCATCATTGTTTTGTTTTGCAATTTCAAACAACTATCTTCTTTTcttctt                                                                                                               >  2:235782/1‑141 (MQ=255)
                               cGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCa                                                                                                            >  2:181441/1‑141 (MQ=255)
                               cGTAAGAAGCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCa                                                                                                            <  2:520865/141‑1 (MQ=255)
                                   aGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCt                                                                                                        >  2:700677/1‑141 (MQ=255)
                                      aTCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGt                                                                                                     <  1:399725/141‑1 (MQ=255)
                                      aTCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGt                                                                                                     <  2:149408/141‑1 (MQ=255)
                                      aTCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGt                                                                                                     <  2:634471/141‑1 (MQ=255)
                                         tttttCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAg                                                                                                  >  1:1043209/1‑141 (MQ=255)
                                          ttttCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGt                                                                                                 <  1:179336/141‑1 (MQ=255)
                                          ttttCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGt                                                                                                 <  2:500684/141‑1 (MQ=255)
                                           tttCTTTGTTTCAATTTCGTGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCGATTTCAAACAACAAACTTCTTCGTTTCTTCCAATCTAGTAAGtt                                                                                                >  1:287453/1‑141 (MQ=255)
                                            ttCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTa                                                                                               >  1:349059/1‑141 (MQ=255)
                                             tCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTaa                                                                                              <  1:412631/141‑1 (MQ=255)
                                              cTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTaaa                                                                                             >  1:889333/1‑141 (MQ=255)
                                              cTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTaaa                                                                                             >  1:30634/1‑141 (MQ=255)
                                                  gTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCt                                                                                         <  1:756069/141‑1 (MQ=255)
                                                  gTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCt                                                                                         >  2:147973/1‑141 (MQ=255)
                                                  gTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCt                                                                                         <  1:776367/141‑1 (MQ=255)
                                                   tttCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAACGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCtt                                                                                        >  1:491511/1‑141 (MQ=255)
                                                      aattctgaTGATCGCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGCAAGTTACATGCTTGAg                                                                                     <  2:855958/134‑1 (MQ=255)
                                                        aTTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAggg                                                                                   >  2:888023/1‑141 (MQ=255)
                                                        aTTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAggg                                                                                   <  2:649649/141‑1 (MQ=255)
                                                           tCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTc                                                                                <  1:134418/141‑1 (MQ=255)
                                                            cATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGACTTAGAAATTCCAAAACCCCACATACTTCGCTACATCCCATATAGTAAGTTCTATGCTTGAAGGATCg                                                                               >  1:373334/1‑141 (MQ=255)
                                                            cATGATCNCCAATAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCTATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCg                                                                               <  2:810977/141‑1 (MQ=255)
                                                             aTGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACACACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATTCTTGAGGGTTCGt                                                                              <  2:678663/141‑1 (MQ=255)
                                                             aTGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGt                                                                              <  2:713254/141‑1 (MQ=255)
                                                             aTGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGt                                                                              <  2:774323/141‑1 (MQ=255)
                                                               gATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTaa                                                                            >  2:968891/1‑141 (MQ=255)
                                                               gATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTaa                                                                            >  1:827611/1‑141 (MQ=255)
                                                               gATCTCCAAGAATAGTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTaa                                                                            <  2:358070/141‑1 (MQ=255)
                                                                aTCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAAt                                                                           <  2:127466/141‑1 (MQ=255)
                                                                 tctcCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAAtt                                                                          >  1:686918/1‑141 (MQ=255)
                                                                   tcCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTaa                                                                        <  2:268803/141‑1 (MQ=255)
                                                                     cAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACt                                                                      >  2:391838/1‑141 (MQ=255)
                                                                         aaTATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGaa                                                                  <  1:900534/141‑1 (MQ=255)
                                                                          atatTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAAt                                                                 >  2:468615/1‑141 (MQ=255)
                                                                             ttattTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACa                                                              >  2:1022557/1‑141 (MQ=255)
                                                                                  tAGTTCTTTAAAATCATAATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTtc                                                         <  2:920438/141‑1 (MQ=255)
                                                                                     ttCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTtcatc                                                      <  1:751690/141‑1 (MQ=255)
                                                                                     ttCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTtcatc                                                      <  2:796188/141‑1 (MQ=255)
                                                                                      tCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTtcatca                                                     >  2:274942/1‑141 (MQ=255)
                                                                                       cTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCaa                                                    <  2:534972/141‑1 (MQ=255)
                                                                                       cTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCaa                                                    <  1:542684/141‑1 (MQ=255)
                                                                                       cTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCaa                                                    >  1:133488/1‑141 (MQ=255)
                                                                                            aaaTCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGt                                               >  2:346533/1‑141 (MQ=255)
                                                                                             aaTCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGtt                                              >  1:1073000/1‑141 (MQ=255)
                                                                                              atcatcATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTtc                                             >  2:643150/1‑141 (MQ=255)
                                                                                                     tttGTTTTAATGACATCCTCATCATTGATTGGTTTAGCGATTTCAAACAACAAACTTCTTCGTTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATCAGTTCATCAATa                                      <  2:370734/141‑1 (MQ=255)
                                                                                                     tttGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATa                                      <  2:943062/141‑1 (MQ=255)
                                                                                                          tttAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGc                                 <  2:1055297/141‑1 (MQ=255)
                                                                                                          tttAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGc                                 <  1:850497/141‑1 (MQ=255)
                                                                                                           ttAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCt                                >  1:1068023/1‑141 (MQ=255)
                                                                                                            tAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCtt                               >  2:1061571/1‑141 (MQ=255)
                                                                                                             aaTGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCttt                              >  1:980411/1‑141 (MQ=255)
                                                                                                              aTGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTta                             >  1:101617/1‑141 (MQ=255)
                                                                                                              aTGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTta                             >  1:876724/1‑141 (MQ=255)
                                                                                                                gACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTtata                           >  1:262379/1‑141 (MQ=255)
                                                                                                                  cATCCTCATCATTGATTGGTTTAGCGATTTCAAACAACAAACTTCTTCGTTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATCAGTTCATCAATACGAGCTTTATAAt                         <  2:287453/141‑1 (MQ=255)
                                                                                                                  cATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAAt                         <  1:345784/141‑1 (MQ=255)
                                                                                                                        catcatTGATTGGTTTAGCGATTTCAAACAACAAACTTCTTCGTTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATCAGTTAATCAATACGAGCTTTATAATCCTTTa                   >  2:860462/1‑141 (MQ=255)
                                                                                                                          tcatTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACt                 >  2:297568/1‑141 (MQ=255)
                                                                                                                            attgattgGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACttt               >  1:138491/1‑141 (MQ=255)
                                                                                                                              tgattgGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAATTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTa             >  1:213770/1‑141 (MQ=255)
                                                                                                                                attgGTTTAGCGATTTCAAACAACAAACTTCTTCGTTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATCAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTAtt           >  2:35391/1‑141 (MQ=255)
                                                                                                                                  tgGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGa         <  1:186971/141‑1 (MQ=255)
                                                                                                                                  tgGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGa         <  2:327097/141‑1 (MQ=255)
                                                                                                                                  gggTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGa         <  1:596011/140‑1 (MQ=255)
                                                                                                                                     tttAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATtc      <  2:226718/141‑1 (MQ=255)
                                                                                                                                     tttAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATtc      <  1:390693/141‑1 (MQ=255)
                                                                                                                                         gCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATtcatca  >  2:1025817/1‑141 (MQ=255)
                                                                                                                                         gCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATtcatca  <  1:83055/141‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                          
TGATATCTTTGTTAATCTGTTTTATCTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATTCATCA  >  CP000730/2119594‑2119871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑