| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 352,078 | C→T | 5.7% | intergenic (+10/‑1) | USA300HOU_0319 → / → USA300HOU_0320 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 352,078 | 0 | C | T | 5.7% | 263.4 / 2.9 | 86 | intergenic (+10/‑1) | USA300HOU_0319/USA300HOU_0320 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (41/40); new base T (2/3); total (43/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.50e-01 | |||||||||||
TTGATCAATTAGGCCGTGAAAATTATTATATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAGATGATGAAGGTGGAGAGGTT‑GTTTTTAATTATA > CP000730/351938‑352217 | ttGATCAATTAGGCCGTGAAAATTATTATATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGCTCAATATATTAAAGAGCAAGAAGAAGCTGAAATATAGGGGAGATAAc > 1:209573/1‑141 (MQ=255)ttGATCAATTAGGCCGTGAAAATTATTATATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAAc > 1:288695/1‑141 (MQ=255) gATCAATTAGGCCGTGAAAATTATTATATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACAt > 2:269240/1‑141 (MQ=255) aTTAGGCCGTGAAAATTATTATATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACAtaaaaa < 2:519752/141‑6 (MQ=255) ttAGGCCGTGAAAATTATTATATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACttt > 2:845584/1‑141 (MQ=255) ttAGGCCGTGAAAATTATTATATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACttt > 1:611151/1‑141 (MQ=255) tctcgagcaggaagtattatATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTc < 2:855610/127‑1 (MQ=255) tAGGCCGTGAAAATTATTATATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTc < 1:1027069/141‑1 (MQ=255) ggaactccacaatattatATGTATCAAAAATTTTGGATTGTATCAGAAATGGAAGATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCga < 1:1024576/129‑1 (MQ=18) gCCGTGAAAATTATTATATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGACGCTGAACTATAGGGGAGATAACATGACTTTCgaa > 1:1007554/1‑141 (MQ=255) ccGTGAAAATTATTATATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCgaag < 1:142317/141‑1 (MQ=255) ccGTGAAAATTATTATATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCgaag < 1:925433/141‑1 (MQ=255) ccGTGAAAATTATTATATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCgaag < 1:931853/141‑1 (MQ=255) ccGTGAAAATTATTATATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCgaag > 1:617592/1‑141 (MQ=255) aaatattatATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAACCGGAAGGAAGTAAACAGATCGATCAATATATTAAAGAGCAAGAGGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCt < 1:1027783/138‑1 (MQ=17) aaTTATTATATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCt < 2:601877/141‑1 (MQ=255) aaTTATTATATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCt < 2:878392/141‑1 (MQ=255) tattatATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAg < 1:934016/141‑1 (MQ=255) attatATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGt > 2:987394/1‑141 (MQ=255) ttatATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACATTCGAAGAAAAGCTAAgaa > 2:658604/1‑139 (MQ=255) tataTGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCa > 2:601885/1‑141 (MQ=255) tatGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCaaa < 2:433835/141‑1 (MQ=255) tGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATg > 2:669904/1‑141 (MQ=255) tataAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAAGGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAACTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGGNAAATGTa > 2:812763/1‑141 (MQ=255) ataAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTAc < 1:741743/141‑1 (MQ=255) ataAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTAc < 1:794317/141‑1 (MQ=255) aaaaaTTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAAt > 2:65925/1‑141 (MQ=255) aaaaaTTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAAt > 2:1031286/1‑141 (MQ=255) aaaTTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGa < 1:832468/141‑1 (MQ=255) aaaTTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGa < 2:508837/141‑1 (MQ=255) aaTTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGaa < 1:28024/141‑1 (MQ=255) tttGGGGTTATACCAGAAATGGAATACGAAATGGAAGAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGATTTTCGAAGAAAAACTAAGTCAAATGTACAATGAAAt > 1:746756/1‑141 (MQ=14) tGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTg < 2:285006/141‑1 (MQ=255) tGGGGTTATACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAACTAAGTCAAATGTACAATGAAATTg < 2:90714/141‑1 (MQ=17) gggTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCa > 1:476020/1‑141 (MQ=255) gggTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCa > 1:155491/1‑141 (MQ=255) gggTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTCCGAAGAAAAGATAAGTCAAATGTACAATGAAATTGCa > 2:5057/1‑141 (MQ=255) ggTTTTACCAAAAATGAAATATGAAATGGAAGAAATTAAAGAAATCAAACAATATAATAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGaaaaaaaaa < 2:565475/141‑7 (MQ=18) ttttACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAAt > 2:576673/1‑141 (MQ=255) ttttACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAAt < 1:310409/141‑1 (MQ=255) aCCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGaaa < 1:1049277/141‑1 (MQ=255) aGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCa < 2:338059/141‑1 (MQ=255) gAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAg > 1:106086/1‑141 (MQ=255) aaTGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGGTGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTg < 2:951734/141‑1 (MQ=255) aaTGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTg > 2:549891/1‑141 (MQ=255) ggAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGaa > 2:583679/1‑141 (MQ=255) ggAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGaa < 2:428764/141‑1 (MQ=255) tatGAAATGGAAGAAATTAAAGAAATCGATCAATAGATTAAACAGCAAGATGAAGCTGAAATATAGGTGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGAt > 1:932882/1‑141 (MQ=255) atGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATa > 1:607819/1‑141 (MQ=255) aaaTGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGAGGAGATAACATGACTTTCTAAGAAGAGCTAATTCAAATGTACAATGAATTGGCAAATGAAATCAGTGGAATGATACCa > 1:542046/1‑141 (MQ=18) aagaaATTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAACTAAGTCAAATGTACAATGAAATTGCAAATAAAATTAGCAGTATGATACCGGTAGaa < 2:786836/141‑1 (MQ=11) agaaATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGAAAACATGACTTGCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGTTATGATACCAgaaaaaa < 2:213281/141‑7 (MQ=18) gaaATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATg > 2:128586/1‑141 (MQ=255) gaaATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATg > 2:801303/1‑141 (MQ=255) aaaTTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATgg < 2:694340/141‑1 (MQ=255) aaTTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATggg < 1:817341/141‑1 (MQ=255) aTTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGa < 2:157067/141‑1 (MQ=255) ttAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGaa < 1:405430/141‑1 (MQ=255) aaaGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGaaaa > 1:1062270/1‑141 (MQ=255) aaGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGaaaaa > 2:936801/1‑141 (MQ=255) aaGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGaaaaa > 2:93917/1‑141 (MQ=255) aGAAATCGATCAATATATTAAAGAGCAAGATGAACCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAg < 1:1007281/141‑1 (MQ=255) aaTCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGtat > 2:487188/1‑141 (MQ=255) aTCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGtata < 1:34385/141‑1 (MQ=255) aagATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGAATTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGtatat < 2:510237/139‑1 (MQ=255) aTCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACa > 1:697322/1‑141 (MQ=255) aaTATATGAAAGAGCAAGCTGAAGCTGAACTATAGGTGCGATAATATTATTTTCGAAGAAAAACTAAGTCAAATGTACAATGATATTGCAAATGAAATCAGCGGGATGATACCAGTAGAGTGGGAAAAAGTATATACAAtt > 2:676171/1‑141 (MQ=14) ttAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTAc > 2:548398/1‑141 (MQ=255) agagCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGCAGAGAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCGGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAg > 1:792017/1‑141 (MQ=255) agagCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAg > 2:847423/1‑141 (MQ=255) agagCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAg < 1:1040329/141‑1 (MQ=255) gCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAgatg > 1:661404/1‑141 (MQ=255) aGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAGatgatg < 1:71821/141‑1 (MQ=255) aTGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAGATGATGaa > 2:533320/1‑141 (MQ=255) aTGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAGATGATGaa > 2:372638/1‑141 (MQ=255) gAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAGATGATGAAGGTGgaga > 2:801390/1‑141 (MQ=255) aaTATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAGATGATGAAGGTGGAGAgg < 1:609559/141‑1 (MQ=255) atatAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAGATGATGAAGGTGGAGAGgt < 2:111506/141‑1 (MQ=255) taGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAGATGATGAAGGTGGAGAGgtt‑gt < 2:155937/141‑1 (MQ=255) ggggCGATAATATGATTTTCGAAGAAAAACTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGGATGATACCAGTAGAGTGGGAAAAAGTATATACAATTGCTTATGTAGATGATGAAGGTGGAGAAGTC‑Gttt < 2:1060720/141‑1 (MQ=18) ggggAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAGATGATGAAGGTGGAGAGGTT‑Gttt < 2:840606/141‑1 (MQ=255) ggggAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAGATGATGAAGGTGGAGAGGTT‑Gttt > 1:134427/1‑141 (MQ=255) ggggAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAGATGATGAAGGTGGAGAGGTT‑Gttt > 2:435437/1‑141 (MQ=255) gggAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAGATGATGAAGGTGGAGAGGTT‑Gtttt > 2:410412/1‑141 (MQ=255) agaTAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAGATGATGAAGGTGGAGAGGTT‑GTTTTTaa > 1:6312/1‑141 (MQ=255) tAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAGATGATGAAGGTGG‑GCGTTTGGTTTTTAATta < 1:801303/141‑1 (MQ=21) aaCATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAGATGATGAAGGTGGAGAGGTT‑GTTTTTAATtat > 1:747141/1‑141 (MQ=255) aCATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAGATGATGAAGGTGGAGAGGTT‑GTTTTTAATtata < 1:128586/141‑1 (MQ=255) | TTGATCAATTAGGCCGTGAAAATTATTATATGTATAAAAAATTTGGGGTTTTACCAGAAATGGAATATGAAATGGAAGAAATTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAAATATAGGGGAGATAACATGACTTTCGAAGAAAAGCTAAGTCAAATGTACAATGAAATTGCAAATGAAATCAGTGGAATGATACCAGTAGAATGGGAAAAAGTATATACAATTGCCTACGTAGATGATGAAGGTGGAGAGGTT‑GTTTTTAATTATA > CP000730/351938‑352217 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |