New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	9070 =	47 (1.270)	3 (0.080)	3/250	NT	6.6%	coding (2039/2664 nt)	gyrA	DNA topoisomerase (ATP‑hydrolyzing) subunit A
	?	CP000730	9088 =	40 (1.120)					coding (2057/2664 nt)	gyrA	DNA topoisomerase (ATP‑hydrolyzing) subunit A

TACGTTTACCATAACCATTTTCAGTAACTACTAATACTTCATCAACACTGTTTGCATGAGCTACATCAAGCCCTACAACTTCGTCACCTTCACGAAGTGTAATACCTTTCACACCCGTTGCTGTACGGCCTAAAGGACGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/9210‑9070 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtaCAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTTGATGAAGTATTAGTAGTTACTGAAAATGGTTATGGTAAACGTACGCCAGTTAATGAC  >  CP000730/9088‑9224                                                                                                                                                                                                                                                                                        TACGTTTACCATAACCATTTTCAGTAACTACTAATACTTCATCAACACTGTTTGCATGAGCTACATCAAGCCCTACAACTTCGTCACCTTCACGAAGTGTAATACCTTTCACACCCGTTGCTGTACGGCCTAAAGGACGTA                                                                                                                                           >  2:406308/1‑141                                                                           ACAACTTCGTCACCTTCACGAAGTGTAATACCTTTCACACCCGTTGCTGTACGTCCTTTAGGCCGTACAGCAACGG                                                                                                                                  >  1:330691/1‑76                                                                           ACAACTTCGTCACCTTCACGAAGTGTAATACCTTTCACACCCGTTGCTGTACGTCCTTTAGGCCGTACAGCAACGG                                                                                                                                  <  2:330691/76‑1                                                                                                                                   TAAAGGACGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTTGATGAAGTATTAGTAGTTACTGAAAATGGTTATGGTAAACGTACGCCAGT         >  2:419169/1‑141                                                                                                                                          CGTACAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTTGATGAAGTATTAGTAGTTACTGAAAATGGTTATGGTAAACGTACGCCAGTTAATGAC  <  1:171617/141‑1                                                                                                                                                                                                                                                                                        TACGTTTACCATAACCATTTTCAGTAACTACTAATACTTCATCAACACTGTTTGCATGAGCTACATCAAGCCCTACAACTTCGTCACCTTCACGAAGTGTAATACCTTTCACACCCGTTGCTGTACGGCCTAAAGGACGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/9210‑9070 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtaCAGCAACGGGTGTGAAAGGTATTACACTTCGTGAAGGTGACGAAGTTGTAGGGCTTGATGTAGCTCATGCAAACAGTGTTGATGAAGTATTAGTAGTTACTGAAAATGGTTATGGTAAACGTACGCCAGTTAATGAC  >  CP000730/9088‑9224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.