New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	17741 =	40 (1.080)	4 (0.120)	3/240	NT	9.5%	coding (350/939 nt)	USA300HOU_0013	possible membrane protein
	?	CP000730	17834 =	39 (1.130)					coding (443/939 nt)	USA300HOU_0013	possible membrane protein

CTAAACCCTTCTTCTAATATTTGGGTCATATTCGCATCGGCACCGCTCATCGTAATCGCTTCATGTAATGTTTGCTTGAAAGGTTTTACTATGCTCGCTGATGGTGGAATCCTTCCGAATGTTTGTAGTAACATAAAAGCGATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/17885‑17741 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcgattaCGATGAGCGGTGCCGATGCGAATATGACCCAAATATTAGAAGAAGGGTTTAGACAAGCGACCGTTCAATTACCAGGTTTCATCATTATCATTACATTTTTAATCGTCTTAATTAACTTAATCGTTACATTTCCGATTTTA  >  CP000730/17834‑17973                                                                                                                                                                                                                                                                                               CTAAACCCTTCTTCTAATATTTGGGTCATATTCGCATCGGCACCGCTCATCGTAATCGCTTCATGTAATGTTTGCTTGAAAGGTTTTACTATGCTCGCTGATGGTGGAATCCTTCCGAATGTTTGTAGTAACATAAAAGCG                                                                                                                                                  <  1:335703/141‑1                                                       ATCGCTTCATGTAATGTTTGCTTGAAAGGTTTTACTATGCTCGCTGATGGTGGAATCCTTCCGAATGTTTGTAGTAACATAAAAGCGATTACGATGAGCGGTGCCGATGCGAATATGACCCAAATATTAGAAGAAGGGTTT                                                                                            >  1:355538/1‑141                                                         CGCTTCATGTAATGTTTGCTTGAAAGGTTTTACTATGCTCGCTGATGGTGGAATCCTTCCGAATGTTTGTAGTAACATAAAAGCGATTACGATGAGCGGTGCCGATGCGAATATGACCCAAATATTAGAAGAAGGGTTTAG                                                                                          >  1:137668/1‑141                                                         CGCTTCATGTAATGTTTGCTTGAAAGGTTTTACTATGCTCGCTGATGGTGGAATCCTTCCGAATGTTTGTAGTAACATAAAAGCGATTACGATGAGCGGTGCCGATGCGAATATGACCCAAATATTAGAAGAAGGGTTTAG                                                                                          >  1:243799/1‑141                                                                                                    GATGGTGGAATCCTTCCGAATGTTTGTAGTAACATAAAAGCGATTACGATGAGCGGTGCCGATGCGAATATGACCCAAATATTAGAAGAAGGGTTTAGACAAGCGACCGTTCAATTACCAGGTTTCATCATTATCATTACA                                               <  2:355538/141‑1                                                                                                                                               TTACGATGAGCGGTGCCGATGCGAATATGACCCAAATATTAGAAGAAGGGTTTAGACAAGCGACCGTTCAATTACCAGGTTTCATCATTATCATTACATTTTTAATCGTCTTAATTAACTTAATCGTTACATTTCCGATTT    >  1:25882/1‑141                                                                                                                                                 ACGATGAGCGGTGCCGATGCGAATATGACCCAAATATTAGAAGAAGGGTTTAGACAAGCGACCGTTCAATTACCAGGTTTCATCATTATCATTACATTTTTAATCGTCTTAATTAACTTAATCGTTACATTTCCGATTTTA  <  1:319542/141‑1                                                                                                                                                                                                                                                                                               CTAAACCCTTCTTCTAATATTTGGGTCATATTCGCATCGGCACCGCTCATCGTAATCGCTTCATGTAATGTTTGCTTGAAAGGTTTTACTATGCTCGCTGATGGTGGAATCCTTCCGAATGTTTGTAGTAACATAAAAGCGATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/17885‑17741 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcgattaCGATGAGCGGTGCCGATGCGAATATGACCCAAATATTAGAAGAAGGGTTTAGACAAGCGACCGTTCAATTACCAGGTTTCATCATTATCATTACATTTTTAATCGTCTTAATTAACTTAATCGTTACATTTCCGATTTTA  >  CP000730/17834‑17973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.