| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 517080 | NA (NA) | 3 (0.080) | 3/250 | NT | NA | noncoding (2375/2921 nt) | rrl1 | 23S ribosomal RNA |
| ? | CP000730 | = 517096 | NA (NA) | noncoding (2391/2921 nt) | rrl1 | 23S ribosomal RNA | |||||
CACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/516937‑517080‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACACT < CP000730/517096‑516957 CACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGAC < 1:83726/141‑1CACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGAC < 2:415393/141‑1CACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGAC > 1:125014/1‑141CACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGAC > 2:195837/1‑141CACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGAC > 2:195794/1‑141CACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGAC < 1:251554/141‑1 acgataaGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACT > 1:300633/8‑141 ACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACT > 1:163286/1‑141 ACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGAGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACT > 1:373572/1‑141 cgataaGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTG > 2:44571/7‑141 cgataaGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTG > 1:351927/7‑141 cgTATCGTGGTGGGAGACAGTGACAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGCGTGTAAAGGCATAAGGGAGCTTGACTG < 2:35554/139‑1 caTATCGTGGGGGGAGCCAGTGTCAGGGGGGCAGTTGGACTGGGGCGGTCGCCTCCTAGAAGGTAACGGGGGCGCCCGAAGGTTCCCTCAGCAAGGATGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACgg > 2:348289/3‑139 CTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTG < 2:350078/141‑1 CGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCTCGACTTGTAGGTCTCGCAGTCAAGC > 2:111746/1‑141 CTACAAGGGAACGGAGGCGCTAAAAGGTTGCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAACTTCACTGCTCGACTTGTAGGTCTCGCAGTCAAGCCCACTTATGCCTTAACACTCTATGAATG < 2:320680/141‑1 AAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGCGACCGCCCCA > 1:111746/1‑141 TGCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTGCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGAac > 2:434877/1‑139 TGCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACA > 1:123787/1‑141 GCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACAC > 1:143258/1‑141 GCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACAC < 1:352865/141‑1 CTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACACT < 2:181858/141‑1 CTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACACT < 1:312490/141‑1 CACTTATCGTGGTGGGAGACAGTGTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/516937‑517080‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGACACT < CP000730/517096‑516957 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |