New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2082378	46 (1.240)	4 (0.120)	4/236	NT	7.8%	intergenic (+19/+606)	USA300HOU_1940/mapW2	aminotransferase/cell surface protein MapW2
	?	CP000730	= 2082394	52 (1.540)					intergenic (+35/+590)	USA300HOU_1940/mapW2	aminotransferase/cell surface protein MapW2

TTGAAAAATATTCAATTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2082229‑2082378 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccaataatcCGAGTCATACTCATCAGATTATTGGTTGAAATTAATTATCTTAAGTCATCAATCGCTTTAGCAATTGAATCAAATACATGTGGGATATCTTCTTTTTCTACACAGCTAAACGCAATACGAATATCTGTTGCATTAAGTG  <  CP000730/2082394‑2082256                                                                                                                                                                                                                                                                                                   TTGAAAAATATTCAATTGGTGTTATTGCACTTAATGCAAAAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAA                                                                                                                                                      <  2:443705/141‑1  TGAAAAATATTCAATTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAAC                                                                                                                                                     <  1:69032/141‑1     AAAATATTCAATTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAA                                                                                                                                                  >  2:289687/1‑141       AATATTCAATTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATA                                                                                                                                                <  1:110887/141‑1        ATATTCAATTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAA                                                                                                                                               >  1:192826/1‑141        ATATTCAATTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCAACATGTATTTGATTCCATTTCTAAAGCGATGGATGACTTAAGATAATTAATTTCAACCAATAA                                                                                                                                               >  2:151372/1‑141         TATTCAATTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAAT                                                                                                                                              <  1:412481/141‑1                               TTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTTAACCAATAATCCGAGTCATACTCATCAGCTTA                                                                                                                        <  2:202935/141‑1                                  ATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCCGAGTCATACTCATCAGACTATTG                                                                                                                     <  2:382702/141‑1                                         AGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCCGAGTCATACTCATCAGATTATTGGTTGAAA                                                                                                              <  1:435685/141‑1                                              TTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCCGAGTCATACTCATCAGATTATTGGTTGAAATTAAT                                                                                                         <  2:156855/141‑1                                                                                                                                             ACCAATAATCCGAGTCATACTCATCAGATTATTGGTTGAAATTAATTATCTTAAGTCATCAATCGCTTTAGCAATTGAATCAAATACATGTGGGATATCTTCTTTTTCTCCACAGCTAAAAGCCAGCCGAATGTCTGTTGC          >  2:364559/1‑141                                                                                                                                               CAATAATCCGAGTCATACTCATCAGATTATTGGTTGAAATTAATTATCTTAAGTCATCAATCGCTTTAGCAATTGAATCAAATACATGTGGGATATCTTCTTTTTCTACACAGCTAAACGCAATACGAATATCTGTTGCAT        <  2:36216/141‑1                                                                                                                                                AATAATCCGAGTCATACTCATCAGATTATTGGTTGAAATTAATTATCTTAAGTCATCAATCGCTTTAGCAATTGAATCAAATACATGTGGGATATCTTCTTTTTCTACACAGCTAAACGCAATACGAATATCTGTTGCATT       >  1:331169/1‑141                                                                                                                                                   AATCCGAGTCATACTCATCAGATTATTGGTTGAAATTAATTATCTTAAGTCATCAATCGCTTTAGCAATTGAATCAAATACATGTGGGATATCTTCTTTTTCTACACAGCTAAACGCAATACGAATATCTGTTGCATTAAG    >  2:145810/1‑141                                                                                                                                                     TCCGAGTCATACTCATCAGATTATTGGTTGAAATTAATTATCTTAAGTCATCAATCGCTTTAGCAATTGAATCAAATACATGTGGGATATCTTCTTTTTCTACACAGCTAAACGCAATACGAATATCTGTTGCATTAAGTG  <  2:317876/141‑1                                                                                                                                                                                                                                                                                                   TTGAAAAATATTCAATTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2082229‑2082378 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccaataatcCGAGTCATACTCATCAGATTATTGGTTGAAATTAATTATCTTAAGTCATCAATCGCTTTAGCAATTGAATCAAATACATGTGGGATATCTTCTTTTTCTACACAGCTAAACGCAATACGAATATCTGTTGCATTAAGTG  <  CP000730/2082394‑2082256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.