| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2772645 | 36 (0.970) | 4 (0.120) | 4/232 | NT | 10.5% | intergenic (+19/+41) | phoB/USA300HOU_2627 | alkaline phosphatase/hypothetical protein |
| ? | CP000730 | = 2772662 | 36 (1.080) | intergenic (+36/+24) | phoB/USA300HOU_2627 | alkaline phosphatase/hypothetical protein | |||||
ATACAGGGTGGACTTCCGATGGACATACAGGCGAGGATGTTAATACCTACGCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2772493‑2772645‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaattcccgaACACCTTGTTATAGTGCTCGGGAATTTTTTTATGCTTTACTTGAATATATCAAATATTATTTTTGCGCTTTCTGTATTTTCGATATTACCACTAAATGATTCTGATCTAGGTCCGTAAGCGTAGGTATTAACA < CP000730/2772662‑2772530 ATACAGGGTGGACTTCCGATGGACATACAGGCGAGGATGTTAATACCTACGCTTACGGACCTAGCTCAGAATCATTTAGGGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAA > 1:391200/1‑141 ACAGGGTGGACTTCCGATGGACATACAGGCGAGGATGTTAATACCTACGCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAA > 2:205796/1‑141 AGGGTGGACTTCCGATGGACATACAGGCGAGGATGTTAATACCTACGCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAA < 1:257711/141‑1 GGTGGACTTCCGATGGACATACAGGCGAGGATGTTAATACCTACGCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAAT < 1:382539/141‑1 GGTGGACTTCCGATGGACATACAGGCGAGGATGTTAATACCTACGCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAAT < 1:300408/141‑1 GGTGGACTTCCGATGGACATACAGGCGAGGATGTTAATACCTACGCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAAT < 1:382469/141‑1 GGTGGACTTCCGATGGACATACAGGCGAGGATGTTAATACCTACGCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAACACAGAAAGCGCAAAAATAATATTTGATACATTCAAGTAAAGCATAAAAAAAT > 2:83932/1‑141 TGGACTTCCGATGGACATACAGGCGAGGATGTTAATACCTACGCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTC > 1:409294/1‑141 AATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAACACCTTGTTATAGTGCTCGGGAA > 1:187676/1‑94 AATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAACACCTTGTTATAGTGCTCGGGAA < 2:187676/94‑1 TCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAACCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGC < 1:179254/82‑1 TCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAACCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGC > 2:179254/1‑82 AAAAAATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTTTTTATGCTTTACTTGAATATATCAAATATTATTTTTGCGCTTTCTGTATTTTCGATATTACCACTAAATGATTCTGATCTAGGTCCGTAAGCGTAGGTAT > 2:175226/1‑141 AAAACTTCCCGACCACCTTGTTATAGTGCTCGGGAATTTTTTTATGCTTTACTTGAATATATCAAATATTATTTTTGCGCTTTCTGTATTTTCCATATTACCACTAAATGATTCTGATCTAGGTCCGTAAGCGTAGGTATT < 1:395231/141‑1 AAATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTTTTTATGCTTTACTTGAATATATCAAATATTATTTTTGCGCTTTCTGTATTTTCGATATTACCACTAAATGATTCTGATCTAGGTCCGTAAGCGTAGGTATTAA < 1:159097/141‑1 AATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTTTTTATGCTTTACTTGAATATATCAAATATTATTTTTGCGCTTTCTGTATTTTCGATATTACCACTAAATGATTCTGATCTAGGTCCGTAAGCGTAGGTATTAAC > 2:13822/1‑141 ATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTTTTTATGCTTTACTTGAATATATCAAATATTATTTTTGCGCTTTCTGTATTTTCGATATTACCACTAAATGATTCTGATCTAGGTCCGTAAGCGTAGGTATTAACA < 2:323723/141‑1 ATACAGGGTGGACTTCCGATGGACATACAGGCGAGGATGTTAATACCTACGCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2772493‑2772645‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaattcccgaACACCTTGTTATAGTGCTCGGGAATTTTTTTATGCTTTACTTGAATATATCAAATATTATTTTTGCGCTTTCTGTATTTTCGATATTACCACTAAATGATTCTGATCTAGGTCCGTAAGCGTAGGTATTAACA < CP000730/2772662‑2772530 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |