New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 3646267 (1.810)3 (0.090) 3/232 NT 3.4% coding (90/675 nt) tpn IS431mec transposase
?CP000730 76234 = 109 (3.280)intergenic (+292/‑842) USA300HOU_0072/USA300HOU_0075 universal stress protein/lysophospholipase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 145 total aligned reads displayed.

AGTAATCCAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAAT  >  CP000730/76101‑76374
                                                                                                                                      |                                                                                                                                             
aGTAATCAAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAAAAAAAAA‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAAttt                                                                                                                                        <  2:450116/141‑1 (MQ=25)
       cAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAgg                                                                                                                                <  2:137064/141‑1 (MQ=255)
           gAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGt                                                                                                                            >  1:172710/1‑141 (MQ=255)
                 tAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCAc                                                                                                                      >  1:14757/1‑141 (MQ=255)
                 tAACACAAAAACAATTAATTTAAAAATTATAGCAAAATATAGGTTCTGATGCAAAGTTAAAACTATAGTATAATTTTAAC‑AAAAAGGAGTCTTCTGTATAAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCAc                                                                                                                      <  1:149561/141‑1 (MQ=18)
                   acacAAAGGAAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTAAAAAAAAAAA‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTg                                                                                                                    <  2:376142/141‑1 (MQ=18)
                    cacaAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGt                                                                                                                   <  1:345782/141‑1 (MQ=255)
                    cacaAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGt                                                                                                                   <  1:405435/141‑1 (MQ=255)
                         aGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCg                                                                                                              <  1:393618/141‑1 (MQ=255)
                               ttaatttaatAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGct                                                                                                        <  1:379346/141‑1 (MQ=255)
                                          atTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGa                                                                                             >  1:299320/1‑141 (MQ=255)
                                               aGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGc                                                                                        >  1:396102/1‑141 (MQ=255)
                                                 cagttaggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAACGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCAt                                                                                      >  2:424814/9‑141 (MQ=11)
                                                  gtaaatgaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCAtt                                                                                     >  1:433330/8‑141 (MQ=11)
                                                  aaaaTATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCAtt                                                                                     <  1:66744/141‑1 (MQ=255)
                                                   gttaggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTg                                                                                    >  2:453325/7‑141 (MQ=0)
                                                    ttaggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGa                                                                                   <  1:304260/136‑1 (MQ=2)
                                                    ttaggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGa                                                                                   >  1:418828/6‑141 (MQ=2)
                                                      tataGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGt                                                                                 <  1:129059/141‑1 (MQ=39)
                                                      atgaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGt                                                                                 <  1:363800/138‑1 (MQ=2)
                                                      aggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAgc                                                                                 >  2:290717/4‑140 (MQ=2)
                                                                     gaacccaacggtagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatataAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATc                                                                   <  1:1692‑M2/76‑1 (MQ=255)
                                                                     aaaGTTGAATCTATAGTATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGCGTTATCGTGATATATCt                                                                  >  2:263258/1‑141 (MQ=21)
                                                                           gAATCTACAGTAGAAGTTGAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATGTACAAAGTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCGAAGATATGCATTGAGTTATCGTGATATATCTGAAata                                                            <  2:217463/141‑1 (MQ=11)
                                                                           aacggtagatcgttgaatgatgaacgtttacaccacgttctcttaatatttcagatataAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAat                                                             <  2:275144‑M2/82‑1 (MQ=255)
                                                                             atttataatataaTTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATAtt                                                          >  1:262587/4‑141 (MQ=2)
                                                                             atttataatataaTTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATAtt                                                          >  1:242162/4‑141 (MQ=2)
                                                                              tttataatataaTTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTa                                                         <  1:430764/139‑1 (MQ=2)
                                                                               ttataatataaTTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTaa                                                        <  1:298447/140‑1 (MQ=12)
                                                                                 ataatataatTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAga                                                      <  2:210698/141‑2 (MQ=12)
                                                                                 ataatataatTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAga                                                      <  2:78706/141‑2 (MQ=12)
                                                                                 ataatataATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAga                                                      <  1:176680/137‑2 (MQ=12)
                                                                                  taatataATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAgag                                                     >  1:45317/4‑139 (MQ=12)
                                                                                  taGTATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAggg                                                     <  1:213993/141‑1 (MQ=17)
                                                                                  taGTATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAggg                                                     >  2:215459/1‑141 (MQ=17)
                                                                                    gTATAATTTTAAC‑AAAAAGGGTTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGaa                                                   >  2:436442/1‑141 (MQ=12)
                                                                                    gTATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGaa                                                   >  2:353284/1‑141 (MQ=17)
                                                                                     tataATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAAc                                                  <  1:78996/141‑1 (MQ=32)
                                                                                     tataATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAAc                                                  <  1:1017/141‑1 (MQ=12)
                                                                                      ataATTTTAAC‑AAAAAGGAGTCTGCTGTATCAACTA‑TGCAGCAGCCAGTTGTTGATACGAGGAGGTTATCACTTTAGCCGTGGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACg                                                 <  1:409748/141‑1 (MQ=2)
                                                                                      aaaaTTTTAAC‑AAAAAGGAGTAGTCTGTATGAACGATTTCAGATATAAACAATCTA‑AAAAGTATGTTATCACTGTAGCTGTTGTCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACg                                                 <  2:151606/139‑1 (MQ=11)
                                                                                       taATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACgt                                                >  2:94829/1‑141 (MQ=17)
                                                                                       taATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACgt                                                >  2:356212/1‑141 (MQ=17)
                                                                                         aTTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACgtgg                                              <  1:316584/141‑1 (MQ=17)
                                                                                          ttttAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACgtggt                                             <  2:144628/141‑1 (MQ=17)
                                                                                           tttAACAAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACgtggt                                             <  2:25002/141‑1 (MQ=12)
                                                                                           tttAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACgtggtg                                            <  2:265516/141‑1 (MQ=12)
                                                                                           attAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACgtggtg                                            <  2:212874/140‑1 (MQ=17)
                                                                                             tAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCCGATATACACAATCTA‑ACCAGCATGTTATACCTGTAGCCTTTGGCTATTATTTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTa                                          <  1:386171/141‑1 (MQ=11)
                                                                                             tAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ATAAGGATGTTATCACTGTTGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTa                                          <  2:391231/141‑1 (MQ=17)
                                                                                             tAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTa                                          >  2:382488/1‑141 (MQ=17)
                                                                                             tAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACgtttacac                                          <  2:156038/141‑7 (MQ=255)
                                                                                             tAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTa                                          <  1:288104/141‑1 (MQ=12)
                                                                                              aaC‑AAAAAGTAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTaa                                         >  2:202949/1‑141 (MQ=17)
                                                                                              aaC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTaa                                         >  2:160450/1‑141 (MQ=12)
                                                                                              aaC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTaa                                         >  1:438187/1‑141 (MQ=17)
                                                                                               aC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTaaa                                        >  1:280303/1‑141 (MQ=17)
                                                                                               aC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATACTAAGGGAACGTGGTGTaaa                                        >  2:240088/1‑141 (MQ=12)
                                                                                               aC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTaaa                                        >  1:17369/1‑141 (MQ=17)
                                                                                                c‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAAc                                       >  1:337541/1‑141 (MQ=12)
                                                                                                  aaaaaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACg                                      <  1:344072/141‑1 (MQ=32)
                                                                                                  aaaaaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACgtttacaccacg                                      <  2:293877/141‑11 (MQ=11)
                                                                                                  aaaaaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACg                                      >  1:231338/1‑141 (MQ=12)
                                                                                                  aaaaaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACg                                      <  1:154092/141‑1 (MQ=17)
                                                                                                   aaaaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGt                                     <  2:361235/141‑1 (MQ=12)
                                                                                                    aaaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGtt                                    >  1:101213/1‑141 (MQ=17)
                                                                                                    aaaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGtt                                    >  1:101698/1‑141 (MQ=12)
                                                                                                     aaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtc                                   >  2:287632/1‑141 (MQ=32)
                                                                                                        gAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTtcatc                                >  2:12320/1‑141 (MQ=17)
                                                                                                         aGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcatca                               >  1:44995/1‑141 (MQ=32)
                                                                                                         aGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTtcatca                               <  2:304074/141‑1 (MQ=17)
                                                                                                           tcttctGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCAtt                             >  2:181590/1‑141 (MQ=17)
                                                                                                                tGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACg                        >  2:334039/1‑141 (MQ=17)
                                                                                                                  tATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGt                      <  2:88073/141‑1 (MQ=32)
                                                                                                                   tcttaatatttcagatataAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAaga                                                      <  1:393823‑M2/89‑2 (MQ=255)
                                                                                                                   tcttaatatttcagatataAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGACCTATCGTGATATATCTGAAATATTAaga                                                      >  2:393823‑M2/20‑107 (MQ=255)
                                                                                                                   aTGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACgatc                     >  2:192821/1‑138 (MQ=255)
                                                                                                                    ttaaCTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGCACGTGGTGTAAACGTTCATCATTCAACGGTCt                    <  1:293688/139‑1 (MQ=12)
                                                                                                                      aaCTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTAc                  >  1:305091/1‑141 (MQ=17)
                                                                                                                      aaCTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTAc                  >  1:329525/1‑141 (MQ=32)
                                                                                                                         tatttcagatataAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGt               <  1:446628‑M2/128‑1 (MQ=255)
                                                                                                                         tatttcagatataAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGt               <  1:263532‑M2/128‑1 (MQ=255)
                                                                                                                         tatttcagatataAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGt               <  1:217045‑M2/128‑1 (MQ=255)
                                                                                                                          atttcagatataAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGtt              >  1:36234‑M2/13‑141 (MQ=255)
                                                                                                                          atttcagatataAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGtt              >  1:48300‑M2/13‑141 (MQ=255)
                                                                                                                          atttcagatataAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGtt              >  1:280830‑M2/13‑141 (MQ=255)
                                                                                                                          atttcagatataAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGtt              >  2:411949‑M2/13‑141 (MQ=255)
                                                                                                                           tttcagatataAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTg             >  1:84034‑M2/12‑141 (MQ=255)
                                                                                                                           tttcagatataAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTg             >  1:287355‑M2/12‑141 (MQ=255)
                                                                                                                             tcagatataAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTggg           <  1:39948‑M2/132‑1 (MQ=255)
                                                                                                                             tcagatataAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTggg           >  2:113904‑M2/10‑141 (MQ=255)
                                                                                                                              cagatataAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGt          <  2:423237‑M2/133‑1 (MQ=255)
                                                                                                                               agatataAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTCGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGATGGGtt         >  2:218252‑M2/8‑141 (MQ=255)
                                                                                                                               agatataAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGtt         >  2:119045‑M2/8‑141 (MQ=255)
                                                                                                                                gatataAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcatca                               >  1:62162‑M2/7‑118 (MQ=255)
                                                                                                                                gatataAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcatca                               <  2:62162‑M2/112‑1 (MQ=255)
                                                                                                                                 atataAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCa       <  2:199555‑M2/136‑1 (MQ=255)
                                                                                                                                  tataAACAATTTA‑ACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTCAGGGAACGTGGTGTAAACGTTCATCATTCCACGGTCTACCGTCGGGCTcac      >  2:217656‑M2/5‑140 (MQ=255)
                                                                                                                                     aAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGaa   >  1:130577‑M2/2‑141 (MQ=255)
                                                                                                                                      aaCAATTTA‑ACAAGGCTGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAat  <  2:437864/141‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                             
AGTAATCCAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAAC‑AAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTA‑ACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAAT  >  CP000730/76101‑76374

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.