New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 672536	46 (1.280)	3 (0.100)	3/234	3.0	7.9%	intergenic (+138/‑241)	USA300HOU_0614/yvrC	deoxyribonuclease (pyrimidine dimer)/iron (Fe3+) ABC superfamily ATP binding cassette transporter, binding protein
	?	CP000730	672603 =	32 (1.070)					intergenic (+205/‑174)	USA300HOU_0614/yvrC	deoxyribonuclease (pyrimidine dimer)/iron (Fe3+) ABC superfamily ATP binding cassette transporter, binding protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATAATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTA  >  CP000730/672476‑672740                                                                                                                                |                                                                                                                                          tataATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCAc                                                                                                                              <  1:83359/141‑1 (MQ=255) tataATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCAc                                                                                                                              <  1:327844/141‑1 (MQ=255) tataATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCAc                                                                                                                              <  2:242338/141‑1 (MQ=255) tataATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCAc                                                                                                                              >  2:126965/1‑141 (MQ=255) tataATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCAc                                                                                                                              <  1:345141/141‑1 (MQ=255) tataATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAAGCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCAc                                                                                                                              <  1:121914/141‑1 (MQ=255)                aatatAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGa                                                                                                               <  2:280766/140‑1 (MQ=255)                      aaGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAg                                                                                                         >  1:246824/1‑141 (MQ=255)                         aaaaaaaCAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTg                                                                                                      <  2:111610/141‑1 (MQ=255)                         aaaaaaaCAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTg                                                                                                      <  2:126026/141‑1 (MQ=255)                            aaaaCAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGAt                                                                                                   <  1:298482/141‑1 (MQ=255)                             aaaCAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATg                                                                                                  <  1:377275/141‑1 (MQ=255)                              aaCAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGc                                                                                                 >  1:45738/1‑141 (MQ=255)                              aaCAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGc                                                                                                 >  1:359499/1‑141 (MQ=255)                                 aGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTaa                                                                                              <  1:131209/141‑1 (MQ=255)                                 aGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTaa                                                                                              <  2:148917/141‑1 (MQ=255)                                           ttgtGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTg                                                                                    <  1:245102/141‑1 (MQ=255)                                           ttgtGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTg                                                                                    <  1:372086/141‑1 (MQ=255)                                            tgtgCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGc                                                                                   >  1:321674/1‑141 (MQ=255)                                                   caACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGGAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAg                                                                            >  1:207026/1‑141 (MQ=255)                                                   caACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAg                                                                            >  2:377553/1‑141 (MQ=255)                                                   caACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAg                                                                            >  1:291586/1‑141 (MQ=255)                                                             agagCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCCTAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCg                                                                  >  1:9266/1‑141 (MQ=255)                                                             agagCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCg                                                                  >  1:147456/1‑141 (MQ=255)                                                                     tAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGAt                                                          <  2:321674/141‑1 (MQ=255)                                                                                     aGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGtt                                          >  1:375529/1‑141 (MQ=255)                                                                                     aGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCATCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGtt                                          >  2:224309/1‑141 (MQ=255)                                                                                       gggAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTgg                                        <  1:62903/141‑1 (MQ=255)                                                                                         gAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGAt                                      >  2:300489/1‑141 (MQ=255)                                                                                                        gttgttTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTg                       <  1:134115/141‑1 (MQ=255)                                                                                                        gttgttTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTg                       <  1:17077/141‑1 (MQ=255)                                                                                                        gttgttTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGGTGGATGCTAAGGAACAACTGCATAAAACCTCCTAATCGCTAAATATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTg                       <  1:302656/141‑1 (MQ=25)                                                                                                                     caACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCctct          >  1:1421/1‑141 (MQ=255)                                                                                                                     caACTACATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCctct          >  1:215790/1‑141 (MQ=255)                                                                                                                      tttttcATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTa         >  2:299728/6‑141 (MQ=255)                                                                                                                      aaCTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCACTCTa         >  2:330989/1‑141 (MQ=255)                                                                                                                           cATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGc    <  2:45738/141‑1 (MQ=255)                                                                                                                           cATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGc    <  2:359499/141‑1 (MQ=255)                                                                                                                             tAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTa  >  1:77559/1‑141 (MQ=255)                                                                                                                             tAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTa  <  2:201296/141‑1 (MQ=255)                                                                                                                             tAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTa  <  2:284830/141‑1 (MQ=255)                                                                                                                                |                                                                                                                                          TATAATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTA  >  CP000730/672476‑672740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.