| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 800928 | 37 (1.030) | 7 (0.210) | 6/266 | 2.3 | 17.7% | intergenic (+62/‑289) | hisC1/USA300HOU_0748 | histidinol‑phosphate transaminase/hypothetical protein |
| ? | CP000730 | 801948 = | 30 (0.880) | intergenic (+189/+435) | USA300HOU_0748/dgkA1 | hypothetical protein/possible diacylglycerol kinase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATC > CP000730/801812‑802085 | gttagaattacaattggttttaaagaacaaaatgataaaatgttagaagttttatcaaactttaaatacgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATaa < 2:43648‑M2/4‑1 (MQ=255) tAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCGCCAACATAAAg > 2:164581/1‑141 (MQ=255) tAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAg > 2:151712/1‑141 (MQ=255) tAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAg > 2:208801/1‑141 (MQ=255) gACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACt < 1:219495/141‑1 (MQ=255) aTGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCtt > 1:69021/1‑141 (MQ=255) aTGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCtt > 1:330139/1‑141 (MQ=255) gttttaaagaacaaaatgataaaatgttagaagttttatcaaactttaaatacgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCtt < 2:79151‑M2/20‑1 (MQ=255) ttAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTAttt > 2:308982/1‑141 (MQ=255) tACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCACTTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCa > 2:247029/1‑141 (MQ=255) tACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCa > 2:345175/1‑141 (MQ=255) acaacaCTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCAt > 2:78282/1‑141 (MQ=255) acaacaCTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCAt > 2:348629/1‑141 (MQ=255) acacTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAg < 2:33811/141‑1 (MQ=255) acacTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAg < 1:168135/141‑1 (MQ=255) acTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAgtg < 1:223029/141‑1 (MQ=255) cTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAgtgt < 2:250155/141‑1 (MQ=255) cTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAgtgt < 2:117280/141‑1 (MQ=255) atTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAAcc > 2:114428/1‑140 (MQ=255) atTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACt > 2:302546/1‑141 (MQ=255) atTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTAGTTCTTATGCATGAGTGTAACt > 2:143984/1‑141 (MQ=255) tttatcaaactttaaatacgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACt < 2:68288‑M2/54‑1 (MQ=255) caaactttaaatacgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGc > 1:383367‑M2/83‑141 (MQ=255) agtagtTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCa < 1:35194/141‑1 (MQ=255) actttaaatacgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCAtt < 1:77952‑M2/62‑1 (MQ=255) actttaaatacgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCAtt < 1:257516‑M2/62‑1 (MQ=255) cggCGGGGCCCCAACACAGAGAAATTGGATTTCCAATTTCTACAGACAATGCAAGTTGGGGTGGGGCCCCAACATAAAGAAATACTTATTCTTTAGAAATTAGTATTTCTTATGCATGAATTTAACTCATgtaattctatt < 2:245661/139‑11 (MQ=11) cTGCGGGGCCAGCACATAGCAACATTGGAACAACAATTTCAACAGACAATGCAAGTTGGGGT‑GGGCCCAAATATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATAttt < 2:225404/141‑1 (MQ=14) aTTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACt < 1:253337/141‑1 (MQ=255) aTTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACt < 1:316187/141‑1 (MQ=255) tGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTaa > 1:157487/1‑141 (MQ=255) ggAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAAt > 2:184997/1‑141 (MQ=255) agaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATg > 1:275123‑M2/46‑141 (MQ=255) cGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATa > 1:220775/1‑141 (MQ=255) gCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTTTTTTGTTATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATaatcaa > 2:165353/1‑141 (MQ=255) t‑GGGCGCCAACATAAGGGAATACTTTTTCTTTAGAAATTATTCTTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTCTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGt < 2:346052/141‑1 (MQ=18) t‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGt < 2:113423/141‑1 (MQ=255) cccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCttt < 2:157487‑M2/135‑1 (MQ=255) tataTAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATc < 1:208801/138‑1 (MQ=255) aacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATc < 1:151712‑M2/138‑1 (MQ=255) aacATAAAGAAATACTTTTTCTTTAGAAATTAGTAGTACTTATTCTTGAGTGGAACACAGTCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATc < 1:164581‑M2/138‑1 (MQ=255) | GTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGT‑GGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATC > CP000730/801812‑802085 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |