New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2144160	31 (0.860)	4 (0.120) +TGGTTTATCT	3/260	3.3	12.2%	coding (484/1254 nt)	sdrH	Ser‑Asp rich fibrinogen/bone sialoprotein bindin protein SdrH
	?	CP000730	2144165 =	31 (0.860)					coding (479/1254 nt)	sdrH	Ser‑Asp rich fibrinogen/bone sialoprotein bindin protein SdrH
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCAGGTTGATCGGGATCTGGTGACGGGTTAGGATTTGGCTTATTAGGGTCTGGTTTTGGATTCGGATTTGGCTTTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTGGTTTTGGATCCGGTTTTGGTTTCGGGTTATCTGGATCTGGTTTAGGATT  >  CP000730/2144048‑2144298                                                                                                                            |                                                                                                                                      ccAGGTTGATCGGGATCTGGTGACGGGTTAGGATTTGGCTTATTGGGGTCTGGTTTTGGGTTCGGATGTGGCTTTGGTTTATCTGGATCTGGTCTTGGCGTCGGATTTGGCTT‑‑‑GTTA‑‑‑GGGTCAGGGTTTGGTAATGGAttg                                                                                                                >  2:232147/1‑140 (MQ=255)   gggTTGATCGGGATCTGGTGACGGGTTAGGATTTGGCTTATTAGGGTCTGGTTTTGGATTCGGATTTGGCTTTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTgg                                                                                                              <  2:189768/140‑1 (MQ=255)   aGGTTGATCGGGATCTGGTGACGGGTTAGGATTTGGCTTATTAGGGTCTGGTTTTGGATTCGGATTTGGCTTTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTgg                                                                                                              <  2:378687/141‑1 (MQ=255)         aTCGGGATCTGGTGACGGGTTAGGATTTGGCTTATTAGGGTCTGGTTTTGGATTCGGATTTGGCTTTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCgg                                                                                                        >  1:298588/1‑141 (MQ=255)           cGGGATCTGGTGACGGGTTAGGATTTGGCTTATTAGGGTCTGGTTTTGGATTCGGATTTGGCTTTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGt                                                                                                      <  1:101333/141‑1 (MQ=255)           cGGGATCTGGTGACGGGTTAGGATTTGGCTTATTAGGGTCTGGTTTTGGATTCGGATTTGGCTTTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGt                                                                                                      <  2:224555/141‑1 (MQ=255)                tCTGGTGACGGGTTAGGATTTGGCTTATTAGGGTCTGGTTTTGGATTCGGATTTGGCTTTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTGGTTTTGGATCTGGTTTTGGTTTCggg                                                                                                       >  2:28879/1‑141 (MQ=11)                  tGGTGACGGGTTAGGATTTGGCTTATTAGGGTCTGGTTTTGGATTCGGATTTGGCTTTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGTTCTGGATTTGGTTTCGGGTTatctgg                                                                                               >  2:7636/1‑141 (MQ=255)                  tGGTGACGGGTTAGGATTTGGCTTATTAGGGTCTGGTTTTGGATTCGGATTTGGCTTTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTatctgg                                                                                               >  2:90228/1‑141 (MQ=255)                   ggTGACGGGTTAGGATTTGGCTTATTAGGGTCTGGATTTGGATTCGGATTTGGCTTTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTatctgga                                                                                              >  1:323369/1‑141 (MQ=255)                     tGACGGGTTAGGATTTGGCTTATTAGGGTCTGGTTTTGGATTCGGATTTGGCTTTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTatctggatc                                                                                            >  1:91643/1‑141 (MQ=255)                                       cTTATTAGGGTCTGGTTTTGGATTCGGATTTGGCTTTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGAtt                                                                          <  2:298955/141‑1 (MQ=255)                                             aGGGTCTGGTTTTGGATTCGGATTTGGCTTTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCtt                                                                    >  1:171639/1‑141 (MQ=255)                                                      ttttGGATTCGGATTTGGCTTTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTGGTTTTGGATCTGGTTTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCAGATTTGGCTTTgg                                                                 <  1:28879/141‑1 (MQ=11)                                                         tGGATTCGGATTTGGCTTTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTgg                                                        >  2:329479/1‑141 (MQ=255)                                                          ggatttggatttGGCGTTTGTTTAGTTGGATCTGGTTTTGGATGAGGATTTTGCTT‑‑‑ATTA‑‑‑GGTTCGGGTTTTGGTTCTGGATTTGGTTTTGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTggg                                                       <  2:410772/141‑1 (MQ=21)                                                          ggATTCGGATTTGGCTTTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTggg                                                       <  2:391045/141‑1 (MQ=255)                                                               tggATTTGGCTTTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTgg                                                  <  2:139845/140‑1 (MQ=255)                                                               cGGATTTGGCTTTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTgg                                                  <  1:329544/141‑1 (MQ=255)                                                                              tttATCTGGATCTGGTTTTGGATCGGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTGGTTTTGGATCCGGttt                                   <  2:289167/141‑1 (MQ=255)                                                                              tttATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTGGTTTTGGATCCGGttt                                   <  1:106459/141‑1 (MQ=255)                                                                              tttATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTGGTTTTGGATCCGGttt                                   <  2:323369/141‑1 (MQ=255)                                                                              tttATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTGGTTTTGGATCCGGttt                                   <  2:138665/141‑1 (MQ=255)                                                                               ttATCTGGTTCTGGTTTTGGATTCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTGGTTTTGGATCCGGtttt                                  <  2:390412/141‑1 (MQ=255)                                                                               ttATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGTTCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTGGTTTTGGATCCGGtttt                                  <  2:51246/141‑1 (MQ=255)                                                                               ttATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTGGTTTTGGATCCGGtttt                                  <  2:242189/141‑1 (MQ=255)                                                                               ttATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTGGTTTTGGATCCGGtttt                                  <  2:20722/141‑1 (MQ=255)                                                                                          tggTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTGGTTTTGGATCCGGTTTTGGTTTCGGGtt                       >  2:256310/1‑141 (MQ=255)                                                                                          tggTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTGGTTTTGGATCCGGTTTTGGTTTCGGGtt                       >  1:315536/1‑141 (MQ=255)                                                                                          tggTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTGGTTTTGGATCCGGTTTTGGTTTCGGGtt                       >  1:115716/1‑141 (MQ=255)                                                                                           ggTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTGGTTTTGGATCCGGTTTTGGTTTCGGGTTa                      >  1:27379/1‑141 (MQ=255)                                                                                                        gagtgggCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGAGTCGGATTTGGCTGTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTGGTTTTGGATCTGGTTTTGGTTTCGGGTTATCTGGATCTGGtt         <  2:121483/136‑1 (MQ=14)                                                                                                        gATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATTCGGATTTGGCTTTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTGGTTTTGGATCTGGTTTTGGTTTCGGGTTATCTGGATCTGGtt         <  1:203225/141‑1 (MQ=14)                                                                                                              gCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTGGTTTTGGATCCGGTTTTGGTTTCGGGTTATCTGGATCTGGTTTAGGAt   >  1:104291/1‑141 (MQ=255)                                                                                                               cTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTGGTTTTGGATCCGGTTTTGGTTTCGGGTTATCTGGATCTGGTTTAGGAtt  >  1:414205/1‑141 (MQ=255)                                                                                                                            |                                                                                                                                      CCAGGTTGATCGGGATCTGGTGACGGGTTAGGATTTGGCTTATTAGGGTCTGGTTTTGGATTCGGATTTGGCTTTGGTTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTT‑‑‑ATTA‑‑‑GGGTCTGGTTTTGGATCTGGATTTGGTTTCGGGTTATCTGGATCTGGTTTTGGATCCGGATTTGGCTTTGGTTTATCTGGGTCTGGTTTTGGATCCGGTTTTGGTTTCGGGTTATCTGGATCTGGTTTAGGATT  >  CP000730/2144048‑2144298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.