New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2476329 =30 (0.840)9 (0.260) 5/268 2.6 23.5% intergenic (‑74/+166) tcaA/tcaR teicoplanin resistance protein TcaA/transcriptional regulator TcaR
?CP000730 = 2476325 30 (0.870)intergenic (‑70/+170) tcaA/tcaR teicoplanin resistance protein TcaA/transcriptional regulator TcaR

TTATGTCCACATTGTGTACATATCTGTACATCATCTTGTGCTTGTTGTCCGCACTTCGGGCAAGATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATAC  >  CP000730/2476185‑2476460
                                                                                                                                            |                                                                                                                                       
ttATGTCCACATTGTGTACATATCTGTACATCATCTTGTGCTTGTTGTCCGCACTTCGGGCAAGATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTAcc                                                                                                                                         <  1:256295/141‑1 (MQ=255)
              tgcaCATATCTGTACATCATCTTGTGCTTGTTGTCCGCACTTCGGGCAAGATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACa                                                                                                                           >  1:138344/4‑141 (MQ=255)
               gtACATATCTGTACATCATCTTGTGCTTGTTGTCCGCACTTCGGGCAAGATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACaa                                                                                                                          >  2:89434/1‑141 (MQ=255)
                tACATATCTGTACATCATCTTGTGCTTGTTGTCCGCACTTCGGGCAAGATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACaaa                                                                                                                         >  1:149698/1‑141 (MQ=255)
                               catcTTGTGCTTGTTGTCCGCACTTCGGGCAAGATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCattattttacaaatattatcccaagaataca                                                                                                          <  1:2580‑M2/141‑32 (MQ=255)
                                   ttGTGCTTGTTGTCCGCACTTCGGGCAAGATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCattattttacaaatattatcccaagaatacaattc                                                                                                      >  2:72874‑M2/1‑106 (MQ=255)
                                   ttGTGCTTGTTGTCCGCACTTCGGGCAAGATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCattattttacaaatattatcccaagaatacaattc                                                                                                      >  1:24695‑M2/1‑106 (MQ=255)
                                    tgtgCTTGTTGTCCGCACTTCGGGCAAGATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAAt                                                                                                     <  2:99044/141‑1 (MQ=255)
                                    tgtgCTTGTTGTCCGCACTTCGGGCAAGATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAAt                                                                                                     <  2:264037/141‑1 (MQ=255)
                                      tgCTTGTTGTCCGCACTTCGGGCAAGATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTTATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTc                                                                                                   <  1:296888/141‑1 (MQ=255)
                                      tgCTTGTTGTCCGCACTTCGGGCAAGATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTc                                                                                                   >  1:304298/1‑141 (MQ=255)
                                       gCTTGTTGTCCGCACTTCGGGCAAGATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCattattttacaaatattatcccaagaatacaattcaaga                                                                                                  <  1:209052‑M2/141‑40 (MQ=255)
                                       gCTTGTTGTCCGCACTTCGGGCAAGATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCattattttacaaatattatcccaagaatacaattcaaga                                                                                                  <  1:139945‑M2/141‑40 (MQ=255)
                                        cTTGTTGTCCGCACTTCGGGCAAGATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCaa                                                                                                 <  1:23369/141‑1 (MQ=255)
                                                 cGCACTTCGGGCAAGATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGAtt                                                                                        >  2:72887/1‑141 (MQ=255)
                                                        cGGGCAAGATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAacttta                                                                                 >  1:250652/1‑141 (MQ=255)
                                                        cGGGCAAGATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAacttta                                                                                 >  1:307066/1‑141 (MQ=255)
                                                        cGGGCAAGATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAacttta                                                                                 >  1:327717/1‑141 (MQ=255)
                                                               gATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGa                                                                          >  1:174831/1‑141 (MQ=255)
                                                               gATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGa                                                                          >  2:153315/1‑141 (MQ=255)
                                                               gATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGa                                                                          >  1:290207/1‑141 (MQ=255)
                                                                    cATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGt                                                                     <  2:138344/141‑1 (MQ=255)
                                                                      tACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTAc                                                                   >  2:383972/1‑141 (MQ=255)
                                                                             aCCTCAATTCTGTTCCTCTTCAATTGTTATATGAAAAAAACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCttatta                                                            <  2:364028/141‑1 (MQ=255)
                                                                               cTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCattattttacaaatattatcccaagaatacaattcaagaaatgattaactttactttagaattgtaccttattacatta                                                          <  2:105178‑M2/141‑80 (MQ=255)
                                                                               cTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCattattttacaaatattatcccaagaatacaattcaagaaatgattaactttactttagaattgtaccttattacatta                                                          <  1:399757‑M2/141‑80 (MQ=255)
                                                                                tCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACat                                                         >  2:374509/1‑141 (MQ=255)
                                                                                     tCTGTTCCTATTTAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACAttattt                                                    <  2:115241/141‑1 (MQ=255)
                                                                                        gTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATg                                                 >  2:204618/1‑141 (MQ=255)
                                                                                          tCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGaa                                               <  1:285328/141‑1 (MQ=255)
                                                                                                   aTTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTActctc                                      >  2:13413/1‑141 (MQ=255)
                                                                                                   aTTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACAATGGTTATTAAAGTActctc                                      >  1:230892/1‑141 (MQ=255)
                                                                                                           atGTATATCACAAAAATTATTTCATTATTTTACCattattttacaaatattatcccaagaatacaattcaagaaatgattaactttactttagaattgtaccttattacattatttatgaaagtactctctcaattataac                              >  2:139945‑M2/1‑34 (MQ=255)
                                                                                                           atGTATATCACAAAAATTATTTCATTATTTTACCattattttacaaatattatcccaagaatacaattcaagaaatgattaactttactttagaattgtaccttattacattatttatgaaagtactctctcaattataac                              >  2:209052‑M2/1‑34 (MQ=255)
                                                                                                                    acaAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGGAAGTACTCTCTCAATTATAACTaaaaa                     <  2:90563/141‑1 (MQ=255)
                                                                                                                     caAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAaag                    >  2:65102/1‑141 (MQ=255)
                                                                                                                     caAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAaag                    <  1:110020/141‑1 (MQ=255)
                                                                                                                     caAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAaag                    >  2:114557/1‑141 (MQ=255)
                                                                                                                          attattTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGgt               >  2:199014/1‑141 (MQ=255)
                                                                                                                                       tttACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAatacatac  >  1:171217/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                       
TTATGTCCACATTGTGTACATATCTGTACATCATCTTGTGCTTGTTGTCCGCACTTCGGGCAAGATTTCATACTTTCACCTCAATTCTGTTCCTCTTCAATTGTTATATGTATATCACAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATAC  >  CP000730/2476185‑2476460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.