New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2635582	50 (1.390)	4 (0.110) +TCT	3/274	3.5	7.7%	coding (366/3057 nt)	fnbA	fibronectin‑binding protein A
	?	CP000730	2635601 =	48 (1.340)					coding (347/3057 nt)	fnbA	fibronectin‑binding protein A
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCACTTCAACTTGTGTTTCTGCGACTTGATTTTGTGTAGCCTTTTTAGGTGTTAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTGTGTTGCGTTTGACGGTTGTTCTGTTACTGTTGCGTTATATGATTGAGTTTCTTCTA  >  CP000730/2635464‑2635739                                                                                                                                          |                                                                                                                                           ccACTTCAACTTGTGTTTCTGCGACTTGATTTTGTGTAGCCTTTTTAGGTGTTAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCtctt                                                                                                                                         >  2:208059/1‑141 (MQ=255) ccACTGCAACTTGTGTTTCTGCGACTTGATTTTGCGTAGCCTTTTTAGGTGTTAAATCTACTTGTCTTTGATCTCCGCGATTGTCTGGAGATTGAGTGGTTTCCTTAACTTGAGTTTGCGCTTCTTCCTTAACTACCtctt                                                                                                                                         >  2:17558/1‑141 (MQ=255)     ttCAACTTGTGTTTCTGCGACTTGATTTTGTGTAGCCTTTTTAGGTGTTAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCttt                                                                                                                                     >  2:338355/1‑141 (MQ=255)     ttCAACTTGTGTTTCTGCGACTTGATTTTGTGTAGCCTTTTTAGGTGTTAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTCCttt                                                                                                                                     >  1:208863/1‑141 (MQ=255)             gtgtTTCTGCGACTTGATTTTGTGTAGCCTTTTTAGGTGTTAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGttt                                                                                                                             <  1:63131/141‑1 (MQ=255)                     gCGACTTGATTTTGTGTAGCCTTTTTAGGTGTTAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATAttt                                                                                                                     <  2:80330/141‑1 (MQ=255)                     gCGACTTGATTTTGTGTAGCCTTTTTAGGTGTTAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATAttt                                                                                                                     <  2:187790/141‑1 (MQ=255)                     gCGACTTGATTTTGTGTAGCCTTTTTAGGTGTTAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATAttt                                                                                                                     <  2:179418/141‑1 (MQ=255)                          ttGATTTTGTGTAGCCTTTTTAGGTGTTAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTgg                                                                                                                <  1:157490/141‑1 (MQ=255)                                   tgtAGCCTTTTTAGGTGTTAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGt                                                                                                       <  2:217276/141‑1 (MQ=255)                                   tgtAGCCTTTTTAGGTGTTAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGt                                                                                                       <  2:383030/141‑1 (MQ=255)                                       gCCTTTTTAGGTGTTAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTtgt                                                                                                   <  1:397524/141‑1 (MQ=255)                                       gCCTTTTTAGGTGTTAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTtgt                                                                                                   <  2:341279/141‑1 (MQ=255)                                         cTTTTTAGGTGTTAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTgtgg                                                                                                 <  1:401301/141‑1 (MQ=255)                                            tttAGGTGTTAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGc                                                                                              <  1:411613/141‑1 (MQ=255)                                            tttAGGTGTTAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGc                                                                                              <  1:136821/141‑1 (MQ=255)                                               aGGTGTTAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTg                                                                                           <  1:88578/141‑1 (MQ=255)                                                    ttAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTg                                                                                      <  2:97350/141‑1 (MQ=255)                                                    ttAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTg                                                                                      <  2:67598/141‑1 (MQ=255)                                                    ttAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTg                                                                                      <  1:145219/141‑1 (MQ=255)                                                         tCTACTTGTCTTTGATTTCCGCTATTGTCTTGAGGTTGTGTCGTTTCCTTAACTTGAGGTTTC‑‑‑TCT‑‑‑‑‑‑‑‑‑‑‑‑TCTTCTTTAACTGTTTCTACATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAgtt                                                                  <  1:12592/141‑1 (MQ=255)                                                         tCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCtttt                                                                                 <  2:412051/141‑1 (MQ=255)                                                         tCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCtttt                                                                                 <  2:10487/141‑1 (MQ=255)                                                         tCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCtttt                                                                                 <  2:205741/141‑1 (MQ=255)                                                           tACTTGTCTTTGATTTCCGCTATTGTCTTGAGGTTGTGTCGTTTCCTTAACTTGAGGTTTC‑‑‑TCT‑‑‑‑‑‑‑‑‑‑‑‑TCTTCTTTAACTGTTTCTACATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAgttgt                                                                <  2:385960/141‑1 (MQ=255)                                                             cTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTg                                                                             >  2:87793/1‑141 (MQ=255)                                                             cTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTg                                                                             >  2:371049/1‑141 (MQ=255)                                                                   tttGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTCCCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGcttctt                                                                       >  2:187414/1‑141 (MQ=255)                                                                            cGCTATTGTCTTGAGATTGTGTTGTTTCCTTCACTTGAGGTTTCGCTTCTTCCTTAACTACCTTTTCTTTAACTGTTTCTATATTTGCTGGTTTTGCCGTTTGTGTTGCTTGTACTGCTTTTGGTGCTTCTTCAgttgttt                                                              >  2:136107/1‑140 (MQ=255)                                                                            cGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTa                                                              >  1:85536/1‑141 (MQ=255)                                                                                   gTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTgtgt                                                       <  2:233909/141‑1 (MQ=255)                                                                                   gTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTgtgt                                                       <  2:46265/141‑1 (MQ=255)                                                                                        gagaTTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTGTGTTGCGt                                                  <  2:218917/141‑1 (MQ=255)                                                                                                         ttAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTGTGTTGCGTTTGACGGTTGTTCTGtt                                 >  2:28464/1‑141 (MQ=255)                                                                                                          tAACTTGAGGTTTTGATTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTGTGTTGCGTTTGACGGTTGTTCTGTTa                                <  1:22609/141‑1 (MQ=255)                                                                                                          tAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTTACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTGTGTTGCGTTTGACGGTTGTTCTGTTa                                <  1:327395/141‑1 (MQ=255)                                                                                                             cTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTGTGTTGCGTTTGACGGTTGTTCTGTTACTg                             >  2:401370/1‑141 (MQ=255)                                                                                                             cTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTGTGTTGCGTTTGACGGTTGTTCTGTTACTg                             >  2:9473/1‑141 (MQ=255)                                                                                                             cTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTGTGTTGCGTTTGACGGTTGTTCTGTTACTg                             >  2:383412/1‑141 (MQ=255)                                                                                                              ttGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTGTGTTGCGTTTGACGGTTGTTCTGTTACTGt                            >  1:116295/1‑141 (MQ=255)                                                                                                              ttGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTGTGTTGCGTTTGACGGTTGTTCTGTTACTGt                            >  2:263720/1‑141 (MQ=255)                                                                                                              ttGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTGTGTTGCGTTTGACGGTTGTTCTGTTACTGt                            >  2:296125/1‑141 (MQ=255)                                                                                                              ttGAGGTTTCGCGTCTTCCTTAACTACCTCTTCTTTAAGGGTGGCTAGTTTTGCTGTTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTGTGTTGCTTTTGACGGTTGTTCTGTTACTGt                            >  2:351064/1‑141 (MQ=255)                                                                                                                   gTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTGTGTTGCGTTTGACGGTTGTTCTGTTACTGTTGCGt                       <  2:321049/141‑1 (MQ=255)                                                                                                                   gTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTGTGTTGCGTTTGACGGTTGTTCTGTTACTGTTGCGt                       <  2:273044/141‑1 (MQ=255)                                                                                                                    tttCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTGTGTTGCGTTTGACGGTTGTTCTGTTACTGTTGCGtt                      <  1:136107/141‑1 (MQ=255)                                                                                                                     ttCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTGTGTTGCGTTTGACGGTTGTTCTGTTACTGTTGCGTta                     <  2:128794/141‑1 (MQ=255)                                                                                                                                        ccTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGTAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTGTGTTGCGTTTGACGGTTGTTCTGTTACTGTTGCGTTATATGATTGAGTTTCTTCta  >  2:57777/1‑141 (MQ=255)                                                                                                                                        ccTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTGTGTTGCGTTTGACGGTTGTTCTGTTACTGTTGCGTTATATGATTGAGTTTCTTCta  >  2:128240/1‑141 (MQ=255)                                                                                                                                        ccTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTGTGTTGCGTTTGACGGTTGTTCTGTTACTGTTGCGTTATATGATTGAGTTTCTTCta  >  2:128232/1‑141 (MQ=255)                                                                                                                                          |                                                                                                                                           CCACTTCAACTTGTGTTTCTGCGACTTGATTTTGTGTAGCCTTTTTAGGTGTTAAATCTACTTGTCTTTGATCTCCGCTATTGTCTTGAGATTGTGTTGTTTCCTTAACTTGAGGTTTCGCTTCTTCCTTAACTACCTCTTCTTTAACTGTTTCTATATTTGCTGGTTGTGCAGTTTGTGGTGCTTGTACTGCTTTTGGTGCTTCTTCAGTTGTTACTTGTGTTGCGTTTGACGGTTGTTCTGTTACTGTTGCGTTATATGATTGAGTTTCTTCTA  >  CP000730/2635464‑2635739

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.