New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1410425 =	29 (1.000)	3 (0.110)	3/246	3.7	10.2%	coding (483/729 nt)	trpA	tryptophan synthase alpha subunit
	?	CP000730	1410516 =	26 (0.960)					coding (574/729 nt)	trpA	tryptophan synthase alpha subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACTGGCACATTGGCTATCGCTTTAATTGACTCAATTTTTCGTTTTAATTCTGGATGAAACGCACCGTTTTGCCCTGTTGTCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1410508‑1410425 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgtcgcaGGATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAAGAGGTTGCAGATGGCATTG  >  CP000730/1410516‑1410576                                                                                                                                                   ACTGGCACATTGGCTATCGCTTTAATTGACTCAATTTTTCGTTTTAATTCTGGATGAAACGCACCGTTTTGCCCTGTTGTCGCAGGATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAAGAGGTTGCAGATGGC      >  1:302147/1‑141  CTGGCACATTGGCTATCGCTTTAATTGACTCAATTTTTCGTTTTAATTCTGGATGAAACGCACCGTTTTGCCCTGTTGTCGCAGGATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAAGAGGTTGCAGATGGCA     >  1:297231/1‑141     GCACATTGGCTATCGCTTTAATTGACTCAATTTTTCGTTTTAATTCTGGATGAAACGCACCGTTTTGCCCTGTTGTCGCAGGATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAAGAGGTTGCAGATGGCGTTG  <  2:297231/141‑1                                                                                                                                                   ACTGGCACATTGGCTATCGCTTTAATTGACTCAATTTTTCGTTTTAATTCTGGATGAAACGCACCGTTTTGCCCTGTTGTCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1410508‑1410425 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgtcgcaGGATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAAGAGGTTGCAGATGGCATTG  >  CP000730/1410516‑1410576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.