| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2802428 = | 45 (1.550) | 4 (0.150) | 3/248 | 3.8 | 9.0% | coding (1288/1509 nt) | gtf1 | possible glycosyltransferase |
| ? | CP000730 | 2802503 = | 39 (1.430) | coding (1213/1509 nt) | gtf1 | possible glycosyltransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGCATGTTAAACTTGATGAAATTTATAATGATTATGAGTTATTTCTTTCTGCATCAACTAGCGAAGGTTTTGGGTTAACACTAATGGAAGCGGTAGGCTCAGGACTAGGTATGATTGGATTAAATGTGAATTATGGTAACCCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2802571‑2802428‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taacccaaAACCTTCGCTAGTTGATGCAGAAAGAAATAACTCATAATCATTATAAATTTCATCAAGTTTAACATGCCCTAGTAAACGAATATAATCTTGTGCGCGGTGTGTATCAATAATTTTACGCAGTCGCGTCTTCTCGC > CP000730/2802503‑2802637 GGCATGTTAAACTTGATGAAATTTATAATGATTATGAGTTATTTCTTTCTGCATCAACTAGCGAAGGTTTTGGGTTAACACTAATGGAAGCGGTAGGCTCAGGACTAGGTATGATTGGATTAAATGTGAATTATGGTAACC > 2:247907/1‑141 GGGTTAACACTAGTGGAAGCGGTAGGCTCAGGACTAGGTATGATTGGATTAAATGTGAATTATGGTAACCCAAAACCTTCGCTAGTTGATGCAGAAAGAAATAACTCATAATCATTATAAATTTCATCAAGTTTAACATGC > 2:71190/1‑141 GGGTTAACACTAATGGAAGCGGTAGGCTCAGGACTAGGTATGATTGGATTAAATGTGAATTATGGTAACCCAAAACCTTCGCTAGTTGATGCAGAAAGAAATAACTCATAATCATTATAAATTTCATCAAGTTTAACATGC > 2:65410/1‑141 ACACTAGTGGAAGCGGTAGGCTCAGGACTAGGTATGATTGGATTAAATGTGAATTATGGTAACCCAAAACCTTCGCTAGTTGATGCAGAAAGAAATAACTCATAATCATTATAAATTTCATCAAGTTTAACATGCCCTAGT < 1:71190/141‑1 GGTAGGCTCAGGACTAGGTATGATTGGATTAAATGTGAATTATGGTAACCCAAAACCTTCGCTAGTTGATGCAGAAAGAAATAACTCATAATCATTATAAATTTCATCAAGTTTAACATGCCCTAGTAAACGAATATAATC < 1:65410/141‑1 ACCCAAAACCTTCGCTAGTTGATGCAGAAAGAAATAACTCATAATCATTATAAATTTCATCAAGTTTAACATGCCCTAGTAAACGAATATAATCTTGTGCGCGGTGTGTATCAATAATTTTACGCAGTCGCGTCTTCTCGC < 1:153159/141‑1 GGCATGTTAAACTTGATGAAATTTATAATGATTATGAGTTATTTCTTTCTGCATCAACTAGCGAAGGTTTTGGGTTAACACTAATGGAAGCGGTAGGCTCAGGACTAGGTATGATTGGATTAAATGTGAATTATGGTAACCCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2802571‑2802428‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taacccaaAACCTTCGCTAGTTGATGCAGAAAGAAATAACTCATAATCATTATAAATTTCATCAAGTTTAACATGCCCTAGTAAACGAATATAATCTTGTGCGCGGTGTGTATCAATAATTTTACGCAGTCGCGTCTTCTCGC > CP000730/2802503‑2802637 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |