New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 452719	28 (0.970)	3 (0.110)	3/248	3.8	10.1%	coding (573/696 nt)	set21	staphylococcal exotoxin
	?	CP000730	= 452762	27 (0.990)					coding (616/696 nt)	set21	staphylococcal exotoxin
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGATAGTAAATTTAAAATTACTAAAGAAGAAATCTCGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAATATAAATAATCTT  >  CP000730/452590‑452846                                                                                                                                  |                                                                                                                                aGATAGTAAATTTAAAATTACTAAAGAAGAAATCTCGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAga                                                                                                                      <  1:222255/141‑1 (MQ=255)  aaTAGTAAAATTAAAATTAATAAAGAAGAAATCTAGTTAAAAGAGTTGGAATAAAAAAAAAAAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAgat                                                                                                                     <  2:214585/140‑1 (MQ=255)       tAAATTTAAAATTACTAAAGAAGAAATCTCGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATaa                                                                                                                >  2:100370/1‑141 (MQ=255)           tttAAATTTACTAAAGAAGAAATCTCGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGttt                                                                                                            >  1:191894/1‑141 (MQ=255)               aaaTTACTAAAGAAGAAATCTCGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATTGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTtata                                                                                                        <  1:53467/141‑1 (MQ=255)                                aTCTCGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACaaaa                                                                                       <  1:326482/141‑1 (MQ=255)                                 tctcGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACaaaaa                                                                                      >  2:86744/1‑141 (MQ=255)                                  ctcGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACaaaaaa                                                                                     <  1:139487/141‑1 (MQ=255)                                   tcGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACaaaaaaa                                                                                    >  2:304334/1‑141 (MQ=255)                                    cGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAAc                                                                                   >  1:262147/1‑141 (MQ=255)                                    cGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAAc                                                                                   >  2:53571/1‑141 (MQ=255)                                      ttAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTa                                                                                 <  1:86744/141‑1 (MQ=255)                                               ttGGACTTTAAATTAACAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACcgcat                                                                        <  1:193780/141‑1 (MQ=255)                                                         aaTTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTg                                                              <  2:60262/141‑1 (MQ=255)                                                             aaGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGacac                                                          <  2:177588/141‑1 (MQ=255)                                                                aaaaaaaTTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCg                                                                                                  >  2:222902/1‑98 (MQ=255)                                                                aaaaaaaTTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCg                                                                                                  <  1:222902/98‑1 (MQ=255)                                                                          aTGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTAcc                                             <  1:162730/141‑1 (MQ=255)                                                                          aTGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTAcc                                             <  1:301282/141‑1 (MQ=255)                                                                          aTGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGCTAACATTGTAGTTAATGTAGACAATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTAcc                                             <  1:242514/141‑1 (MQ=255)                                                                             gaagaagaaAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCaaa                                          <  1:22245/141‑1 (MQ=255)                                                                                      aaaTTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGaa                                 <  2:191894/141‑1 (MQ=255)                                                                                              tGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGt                         <  1:100370/141‑1 (MQ=255)                                                                                                         ataataGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAat              >  2:5387/1‑141 (MQ=255)                                                                                                                 aaaGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAATataaataa      >  1:185751/1‑141 (MQ=255)                                                                                                                   aGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAATATAAATAATc    >  1:45639/1‑141 (MQ=255)                                                                                                                    ggTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAATATAAATAATCt   >  2:224995/1‑141 (MQ=255)                                                                                                                     gTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAATATAAATAATCtt  >  1:10992/1‑141 (MQ=255)                                                                                                                                  |                                                                                                                                AGATAGTAAATTTAAAATTACTAAAGAAGAAATCTCGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAATATAAATAATCTT  >  CP000730/452590‑452846

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.