New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	211704 =	12 (0.550)	5 (0.250)	3/242	NT	28.4%	intergenic (+262/+66)	USA300HOU_0193/USA300HOU_0194	possible holo‑[acyl‑carrier‑protein] synthase/hypothetical membrane protein
	?	CP000730	211755 =	14 (0.690)					intergenic (+313/+15)	USA300HOU_0193/USA300HOU_0194	possible holo‑[acyl‑carrier‑protein] synthase/hypothetical membrane protein

AGAATTCTTTGGCCATATCGTCTGGATGATGACAATTGAATTAGTGCGACAACATTTTGTCTATCGCTATAAATTAAATTAATACACTGACTAACATTAACGTGAGTTTTAAATCATCGTTTGAGTATGATGATTG‑ATGCTCACGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/211851‑211704 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcacgttaATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGATGCTCTTGGAATGGTTGATCCCACACAGCAGGTA  >  CP000730/211755‑211891                                                                                                                                                                                                                                                                                                AGAATTCTTTGGCCATATCGTCTGGATGATGACAATTGAATTAGTGCGACAACATTTTGTCTATCGCTATAAATTAAATTAATACACTGACTAACATTAACGTGAGTTTTAAATCATCGTTTGAGTATGATGATTG‑ATGCT                                                                                                                                                  <  1:177045/141‑1       CTTTGGCCATATCGTCTGGATGATGACAATTGAATTAGTGCGACAACATTTTGTCTATCGCTATAAATTAAATTAATACACTGACTAACATTAACGTGAGTTTTAAATCATCGTTTGAGTATGATGATTG‑ATGCTCACGTT                                                                                                                                            <  1:17699/141‑1                                           AGTGCGACAACATTTTGTCTATCGCTATAAATTAAATTAATACACTGACTAACATTAACGTGAGTTTTAAATCATCGTTTGAGTATGATGATTG‑ATGCTCACGTTACTGTTAGTCAGTGTATTAATTTAATTTATAGTGAT                                                                                                        >  1:127848/1‑141                                                                                                          GTTTTAAATCATCGTTTGAGTATGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCT                                          >  2:61954/1‑141                                                                                                               AAATCATCGTTTGAGTATGATGATTG‑ATGCTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCCATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGA                                    >  1:209360/1‑141                                                                                                               AAATCATCGTTTGAGTATGATGATTG‑ATGCTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGA                                    >  2:149811/1‑141                                                                                                               AAATCATCGTTTGAGTATGATGATTG‑ATGCTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGA                                    >  2:153847/1‑141                                                                                                                                             CTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGATGCTCTTGGAATGGTTGATCCCACACAGC       >  1:203875/1‑141                                                                                                                                                  GTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGATGCTCTTGGAATGGTTGATCCCACACAGCAGGTA  >  1:148596/1‑141                                                                                                                                                  GTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGATGCTCTTGGAATGGTTGATCCCACACAGCAGGTA  >  1:25218/1‑141                                                                                                                                                                                                                                                                                                AGAATTCTTTGGCCATATCGTCTGGATGATGACAATTGAATTAGTGCGACAACATTTTGTCTATCGCTATAAATTAAATTAATACACTGACTAACATTAACGTGAGTTTTAAATCATCGTTTGAGTATGATGATTG‑ATGCTCACGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/211851‑211704 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcacgttaATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGATGCTCTTGGAATGGTTGATCCCACACAGCAGGTA  >  CP000730/211755‑211891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.