mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 48 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 36,087 | 0 | A | G | 61.2% | 289.8 / inf | 335 | C155C (TGT→TGC) | tpn | IS431mec transposase |
| * | CP000730 | 76,322 | 0 | G | A | 60.5% | 141.1 / 285.2 | 239 | intergenic (+380/‑754) | USA300HOU_0072/USA300HOU_0075 | universal stress protein/lysophospholipase |
| * | CP000730 | 36,315 | 0 | G | A | 60.1% | 230.9 / inf | 376 | Y79Y (TAC→TAT) | tpn | IS431mec transposase |
| * | CP000730 | 76,353 | 0 | G | A | 59.1% | 89.6 / 231.6 | 181 | intergenic (+411/‑723) | USA300HOU_0072/USA300HOU_0075 | universal stress protein/lysophospholipase |
| * | CP000730 | 36,124 | 0 | G | A | 58.9% | 137.6 / inf | 253 | A143V (GCT→GTT) | tpn | IS431mec transposase |
| * | CP000730 | 76,295 | 0 | T | C | 58.6% | 144.4 / 300.3 | 256 | intergenic (+353/‑781) | USA300HOU_0072/USA300HOU_0075 | universal stress protein/lysophospholipase |
| * | CP000730 | 36,269 | 0 | C | T | 58.1% | 89.6 / inf | 332 | A95T (GCA→ACA) | tpn | IS431mec transposase |
| * | CP000730 | 512,643 | 0 | A | G | 57.6% | 50.9 / 105.8 | 86 | intergenic (+711/‑150) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| * | CP000730 | 35,970 | 0 | T | C | 57.2% | 159.5 / inf | 293 | E194E (GAA→GAG) | tpn | IS431mec transposase |
| * | CP000730 | 36,413 | 0 | C | T | 51.7% | 6.9 / inf | 211 | V47I (GTC→ATC) | tpn | IS431mec transposase |
| * | CP000730 | 35,876 | 0 | C | T | 42.6% | 75.5 / 70.6 | 61 | intergenic (+107/+1) | rlmH/tpn | hypothetical protein/IS431mec transposase |
| * | CP000730 | 1,929,930 | 0 | T | A | 39.7% | 48.0 / 79.3 | 58 | intergenic (‑1013/‑155) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,917 | 0 | C | T | 38.6% | 44.4 / 62.4 | 57 | intergenic (‑1000/‑168) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,918 | 0 | A | G | 38.6% | 31.2 / 66.8 | 57 | intergenic (‑1001/‑167) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,925 | 0 | T | A | 37.9% | 51.9 / 76.6 | 58 | intergenic (‑1008/‑160) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,928 | 0 | T | A | 37.9% | 59.4 / 77.4 | 58 | intergenic (‑1011/‑157) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,873 | 0 | C | A | 37.0% | 103.9 / 78.2 | 73 | intergenic (‑956/‑212) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,875 | 0 | T | C | 37.0% | 56.6 / 81.5 | 73 | intergenic (‑958/‑210) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 36,444 | 0 | C | T | 37.0% | 100.4 / 116.6 | 120 | R36R (AGG→AGA) | tpn | IS431mec transposase |
| * | CP000730 | 1,929,941 | 0 | A | T | 36.7% | 38.6 / 64.3 | 49 | intergenic (‑1024/‑144) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |