New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 825232	53 (0.990)	4 (0.080)	4/250	NT	7.1%	coding (24/1056 nt)	USA300HOU_0774	hypothetical membrane protein
	?	CP000730	= 825273	53 (1.030)					coding (65/1056 nt)	USA300HOU_0774	hypothetical membrane protein

GAACGAATTAATTTATAATAAAGCTATAAGATATACGTAGAAAATAGATATATCATTCTATAAAGACAATATTAAATAAATATAACGTTAAAAACAATTAATATCGATGAAGGTGAATAAATGGTTACATTATTACTAGTTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/825089‑825232 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcaATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCATTTATTCACCTTCATCGATATTAATTGTTTTTAACGTTATATTTATTTAATATTGTCTTTATAGAATGATATATCT  <  CP000730/825273‑825134                                                                                                                                                                                                                                                                                              GAACGAATTAATTTAGAATAAAGCTATAAGATATGCGTAGAAAATAGATATATCATTCTATAAAGACAATATTAAATAAATATAACGTTAAAAACACTTAATATCGATGAAGGTGAATAACTGGTTACATTATTACTAGTT                                                                                                                                                 <  1:404194/141‑1   ACGAATTAATTTATAATAAAGCTATAAGATATACGTAGAAAATAGATATATCATTCTATAAAGACAATATTAAATAAATATAACGTTAAAAACAATTAATATCGATGAAGGTGAATAAATGGTTACATTATTACTAGTTGC                                                                                                                                               >  1:663403/1‑141                                                          CTATAAAGACAATATTAAATAAATATAACGTTAAAAACAATTAATATCGATGAAGGTGAATAAATGGTTACATTATTACTAGTTGCAATAACAATTGGTGTTATCGTCAAACTGACAATCATTATTACTGCAACTAGTAAT                                                                                        >  2:509822/1‑141                                                                    AATATTAAATAAATATAACGTTAAAAACAATTAATATCGATGAAGGTGAATAAATGGTTACATTATTACTAGTTGCAATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCA                                                                              >  2:501379/1‑141                                                                                                                          TGGTTACATTATTACTAGTTGCAATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCATTTATTCACCTTCATCGATATTAATTGTTTTTAACGTTATATTTATTTAATATT                        <  1:501379/141‑1                                                                                                                                    ATTACTATTTGCAATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCATTTATTCACCTTCATCGATATTAATTGTTTTTAACGTTATATTTATTTAATATTGTCTTTATAG              <  1:509822/141‑1                                                                                                                                            TTGCAATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGTAACTAGTAATAATGTAACCATTTATTCACCTTCATCGCTATTAATTGTTTTTAACGTTATATTTATTTAATATTCTCTTTATAGAATGATAT      >  2:633691/1‑141                                                                                                                                            TTGCAATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCATTTATTCACCTTCATCGATATTAATTGTTTTTAACGTTATATTTATTTAATATTGTCTTTATAGAATGATAT      >  2:275815/1‑141                                                                                                                                                AATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCATTTATTCACCTTCATCGATATTAATTGTTTTTAACGTTATATTTATTTAATATTGTCTTTATAGAATGATATATCT  >  2:497846/1‑141                                                                                                                                                                                                                                                                                              GAACGAATTAATTTATAATAAAGCTATAAGATATACGTAGAAAATAGATATATCATTCTATAAAGACAATATTAAATAAATATAACGTTAAAAACAATTAATATCGATGAAGGTGAATAAATGGTTACATTATTACTAGTTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/825089‑825232 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcaATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCATTTATTCACCTTCATCGATATTAATTGTTTTTAACGTTATATTTATTTAATATTGTCTTTATAGAATGATATATCT  <  CP000730/825273‑825134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.