New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 82523253 (0.990)4 (0.080) 4/250 NT 7.1% coding (24/1056 nt) USA300HOU_0774 hypothetical membrane protein
?CP000730 = 825273 53 (1.030)coding (65/1056 nt) USA300HOU_0774 hypothetical membrane protein

GAACGAATTAATTTATAATAAAGCTATAAGATATACGTAGAAAATAGATATATCATTCTATAAAGACAATATTAAATAAATATAACGTTAAAAACAATTAATATCGATGAAGGTGAATAAATGGTTACATTATTACTAGTTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/825089‑825232
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcaATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCATTTATTCACCTTCATCGATATTAATTGTTTTTAACGTTATATTTATTTAATATTGTCTTTATAGAATGATATATCT  <  CP000730/825273‑825134
                                                                                                                                                                                                                                                                                            
GAACGAATTAATTTAGAATAAAGCTATAAGATATGCGTAGAAAATAGATATATCATTCTATAAAGACAATATTAAATAAATATAACGTTAAAAACACTTAATATCGATGAAGGTGAATAACTGGTTACATTATTACTAGTT                                                                                                                                                 <  1:404194/141‑1
  ACGAATTAATTTATAATAAAGCTATAAGATATACGTAGAAAATAGATATATCATTCTATAAAGACAATATTAAATAAATATAACGTTAAAAACAATTAATATCGATGAAGGTGAATAAATGGTTACATTATTACTAGTTGC                                                                                                                                               >  1:663403/1‑141
                                                         CTATAAAGACAATATTAAATAAATATAACGTTAAAAACAATTAATATCGATGAAGGTGAATAAATGGTTACATTATTACTAGTTGCAATAACAATTGGTGTTATCGTCAAACTGACAATCATTATTACTGCAACTAGTAAT                                                                                        >  2:509822/1‑141
                                                                   AATATTAAATAAATATAACGTTAAAAACAATTAATATCGATGAAGGTGAATAAATGGTTACATTATTACTAGTTGCAATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCA                                                                              >  2:501379/1‑141
                                                                                                                         TGGTTACATTATTACTAGTTGCAATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCATTTATTCACCTTCATCGATATTAATTGTTTTTAACGTTATATTTATTTAATATT                        <  1:501379/141‑1
                                                                                                                                   ATTACTATTTGCAATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCATTTATTCACCTTCATCGATATTAATTGTTTTTAACGTTATATTTATTTAATATTGTCTTTATAG              <  1:509822/141‑1
                                                                                                                                           TTGCAATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGTAACTAGTAATAATGTAACCATTTATTCACCTTCATCGCTATTAATTGTTTTTAACGTTATATTTATTTAATATTCTCTTTATAGAATGATAT      >  2:633691/1‑141
                                                                                                                                           TTGCAATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCATTTATTCACCTTCATCGATATTAATTGTTTTTAACGTTATATTTATTTAATATTGTCTTTATAGAATGATAT      >  2:275815/1‑141
                                                                                                                                               AATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCATTTATTCACCTTCATCGATATTAATTGTTTTTAACGTTATATTTATTTAATATTGTCTTTATAGAATGATATATCT  >  2:497846/1‑141
                                                                                                                                                                                                                                                                                            
GAACGAATTAATTTATAATAAAGCTATAAGATATACGTAGAAAATAGATATATCATTCTATAAAGACAATATTAAATAAATATAACGTTAAAAACAATTAATATCGATGAAGGTGAATAAATGGTTACATTATTACTAGTTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/825089‑825232
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcaATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCATTTATTCACCTTCATCGATATTAATTGTTTTTAACGTTATATTTATTTAATATTGTCTTTATAGAATGATATATCT  <  CP000730/825273‑825134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.