Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 76,265 C→T 34.0% intergenic (+323/‑811) USA300HOU_0072 → / → USA300HOU_0075 universal stress protein/lysophospholipase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073076,2650CT34.0% 626.0 / inf 686intergenic (+323/‑811)USA300HOU_0072/USA300HOU_0075universal stress protein/lysophospholipase
Reads supporting (aligned to +/- strand):  ref base C (235/212);  new base T (125/106);  total (366/320)
Fisher's exact test for biased strand distribution p-value = 7.45e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.77e-01

Only 100 of 694 total aligned reads displayed.

CAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAA  >  CP000730/76129‑76405
                                                                                                                                        |                                                                                                                                            
            taatTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTaa                                                                                                                              >  2:68613/1‑141 (MQ=255)
                       gttaggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTg                                                                                                                   <  1:530788/135‑1 (MQ=2)
                        ttaggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGa                                                                                                                  >  2:559875/6‑141 (MQ=0)
                            gaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGATACTATCTAAGATATGCATTGAgcta                                                                                                              <  2:414361/140‑4 (MQ=11)
                                    gTTGCAAAGTTGAATCTATAGTATAATTTTAACTAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGGGata                                                                                                      <  1:452451/141‑1 (MQ=25)
                                    actggaaaGTTGAATTTATAATAAAAAAATAACAAAAAGGAGTCTTCTGTAGGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGata                                                                                                      <  2:329564/136‑1 (MQ=1)
                                        cAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATc                                                                                                  <  1:478850/141‑1 (MQ=35)
                                           aGTTGAATGTATAGAATAATTTTAACAAAAAGGAGTCTTCTGTATAAAACATTTCAGATATAAACAATTTAACAAGGATGTTATCACTTTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGa                                                                                               <  1:222137/141‑1 (MQ=11)
                                           aGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGa                                                                                               <  1:214923/141‑1 (MQ=35)
                                                 atttataatataaTTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATTTAAGATATGCATTGAGCTATCGTGATATATCTGAAATAtt                                                                                         <  1:77081/138‑1 (MQ=2)
                                                  tttataGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTa                                                                                        >  1:27113/3‑141 (MQ=11)
                                                   ttattGTAAAATTTGAACAAAAAGGAGTCTTCTGTATTAACTATTTCAGATCTAATCAATCTAACAAGGAAGTTATCACTAGAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTaa                                                                                       <  2:170984/140‑1 (MQ=11)
                                                   ttataGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTaa                                                                                       <  1:467748/140‑1 (MQ=14)
                                                     ataatataatTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAga                                                                                     <  1:572980/141‑2 (MQ=12)
                                                     ataatataATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAga                                                                                     <  1:146962/137‑2 (MQ=12)
                                                     ataGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAgg                                                                                     >  2:564664/1‑141 (MQ=17)
                                                         tataATTTTAACAAACAGGAGTCTTCTGTATGAACTATTTGAGATATAAAAAGTTTAACAAGGATGTTATCACTGTAGCCGTTTTCTACTATCTAAGATATGACTTGAACTATCGTGATATAGCTGAGATATTAAGCGAAc                                                                                 >  1:54495/1‑141 (MQ=11)
                                                         tataATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAAc                                                                                 >  1:516255/1‑141 (MQ=17)
                                                          ataATTTTAACAACAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGGTATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACg                                                                                <  2:479474/141‑1 (MQ=255)
                                                          ataATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACg                                                                                <  2:161149/141‑1 (MQ=17)
                                                           taATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACgt                                                                               <  2:107954/141‑1 (MQ=17)
                                                               tttAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACgtggtg                                                                           <  1:13630/141‑1 (MQ=12)
                                                                ttAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGgtgt                                                                          >  1:283118/1‑141 (MQ=17)
                                                                ttAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTGAGAGAACGTGgtgt                                                                          >  1:203095/1‑141 (MQ=12)
                                                                  aaCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTaa                                                                        >  1:498676/1‑141 (MQ=17)
                                                                  aaCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTaa                                                                        <  1:262091/141‑1 (MQ=12)
                                                                  aaCAAAAAGGAGTCTTCTGTATGAAATAATTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTaa                                                                        >  2:276606/1‑141 (MQ=255)
                                                                   aCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGGTTaaa                                                                       >  2:527305/1‑141 (MQ=255)
                                                                   aCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTCGGCTACTATCTAAGACATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTaaa                                                                       <  1:642534/141‑1 (MQ=255)
                                                                     aaaaaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGACATATTAAGGGAACGTGGTGTAAACg                                                                     >  1:96679/1‑141 (MQ=17)
                                                                      aaagGGAGGTTTCTGTATGAACTATTTCAGAGAGAAACAATGTACGAAGGGTGTGATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGt                                                                    <  2:203113/141‑1 (MQ=11)
                                                                        aaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTtc                                                                  <  2:392280/141‑1 (MQ=12)
                                                                         aGGAGTCTTCTGTATGGACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGTGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTtca                                                                 <  2:638733/141‑1 (MQ=255)
                                                                          ggAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAAAACGTGGTGTAAACGTtcat                                                                >  2:183116/1‑141 (MQ=12)
                                                                           gagaCTTCTGTATGAACTATTGCAGGTATAAACAGTTGAACAAGGAGGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGACTTATCGTGATATATCTGAAATATTAAGGGAGCGTGGTGGAAACGTtcatc                                                               <  2:491509/141‑1 (MQ=11)
                                                                            attcttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGAAATATCTGAAATATTAATAGAACGTGGTGTACACGTtcatca                                                              <  1:487694/139‑1 (MQ=11)
                                                                             gTCTTCTGTATGACCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTcatcat                                                             <  2:368564/141‑1 (MQ=12)
                                                                             gTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTcatcat                                                             <  2:193284/141‑1 (MQ=17)
                                                                              tcttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCAtt                                                            >  2:218522/1‑141 (MQ=17)
                                                                              tcttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCAtt                                                            <  2:323430/141‑1 (MQ=17)
                                                                                  ctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAAc                                                        <  1:68613/141‑1 (MQ=32)
                                                                                  ctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAAc                                                        <  2:213091/141‑1 (MQ=32)
                                                                                   tGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACg                                                       >  1:118301/1‑141 (MQ=17)
                                                                                    ttATGAACTATTTCAGATATAAACAATTTAACGAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACga                                                      <  2:51481/140‑2 (MQ=255)
                                                                                       tGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCt                                                   >  1:438788/1‑141 (MQ=17)
                                                                                       tGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCt                                                   >  2:120386/1‑141 (MQ=12)
                                                                                         aaCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGGACGTGGTGTAACAGTTCATCATTCAACGGTCttc                                                 >  2:651788/1‑139 (MQ=11)
                                                                                          aCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTAcc                                                <  1:37637/141‑1 (MQ=17)
                                                                                          aCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTAcc                                                >  1:125470/1‑141 (MQ=12)
                                                                                           cTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGCTAGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCGGAAATATTAAGGGAACGCGGTGAAAACGTGCAGCATGCAACGGTCTACCg                                               >  2:426839/1‑141 (MQ=11)
                                                                                            tATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGt                                              <  2:227555/141‑1 (MQ=12)
                                                                                            tATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGt                                              <  1:414231/141‑1 (MQ=255)
                                                                                             aTTTCAGATATAAAGAATTTAACAAGGATGTTATCACTGTAGCCATTGGTTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGCTCATACTTCAACAATCTACCGtt                                             >  1:363554/1‑141 (MQ=11)
                                                                                              tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTGTCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAACCGTTCATCATTCAACGATCTACCGTTg                                            >  1:298194/1‑141 (MQ=11)
                                                                                               ttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTgg                                           <  2:13086/141‑1 (MQ=17)
                                                                                               ttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATATACCGTTgg                                           >  2:505480/1‑141 (MQ=255)
                                                                                                tCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTggg                                          >  2:296806/1‑141 (MQ=12)
                                                                                                 cAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGCAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGt                                         >  2:80614/1‑141 (MQ=17)
                                                                                                  aGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCATTGGGtt                                        >  1:590725/1‑141 (MQ=255)
                                                                                                  aGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGATATCGTGATATATTTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGtt                                        >  2:386545/1‑141 (MQ=255)
                                                                                                   gATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTc                                       <  1:234189/141‑1 (MQ=17)
                                                                                                   gATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTc                                       >  2:251219/1‑141 (MQ=255)
                                                                                                    atatAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCa                                      >  1:337251/1‑141 (MQ=17)
                                                                                                       taAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGa                                   >  1:599878/1‑141 (MQ=17)
                                                                                                         aaCAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAat                                 >  2:1437/1‑141 (MQ=17)
                                                                                                         aaCAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTTCCGTTGGGTTCAAGAat                                 >  2:612295/1‑141 (MQ=255)
                                                                                                         aaCAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAat                                 >  1:353820/1‑141 (MQ=12)
                                                                                                          aCAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTAACGTTGGGTTCAAGAata                                >  2:286236/1‑141 (MQ=17)
                                                                                                             aTTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGc                             <  1:559428/141‑1 (MQ=32)
                                                                                                             aTTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGc                             <  2:87552/141‑1 (MQ=12)
                                                                                                               ttAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGccc                           >  2:463864/1‑141 (MQ=255)
                                                                                                                 aaCAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCa                         >  2:623653/1‑141 (MQ=255)
                                                                                                                 aaCAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCa                         <  2:575456/141‑1 (MQ=255)
                                                                                                                 aaCAAGGATGTTATCAATGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCa                         >  1:329778/1‑141 (MQ=255)
                                                                                                                  aCAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCaa                        >  2:448849/1‑141 (MQ=12)
                                                                                                                  aCAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTAATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCaa                        >  2:151597/1‑141 (MQ=255)
                                                                                                                    aaGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATAGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAAtt                      >  2:550515/1‑141 (MQ=255)
                                                                                                                     aGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTGCAAGAACGAAGGGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCCAGAATATGCCCCAAttt                     >  1:316868/1‑141 (MQ=11)
                                                                                                                      ggATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAAtttt                    >  1:388185/1‑141 (MQ=12)
                                                                                                                        aTGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACTTCCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTtat                  <  2:472604/141‑1 (MQ=11)
                                                                                                                         tGTAATCACTGTAGCTGTTGGCTACTATCCAACATAAGCATCCAGTTAACGTGATATATCTGAAATATTAAGGGAACCTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTtata                 <  1:89007/141‑1 (MQ=11)
                                                                                                                          gTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCCATTTTatat                >  1:190881/1‑141 (MQ=21)
                                                                                                                          gTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTatat                >  1:399302/1‑141 (MQ=25)
                                                                                                                          gTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTatat                <  2:236482/141‑1 (MQ=25)
                                                                                                                          gTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTATACGTTCATCATTCACCGAACTACCGCTGGGCTCAAGAATATGACCCCATTTTatat                >  1:622840/1‑141 (MQ=11)
                                                                                                                           ttATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATc               <  1:163002/141‑1 (MQ=25)
                                                                                                                             aTCACTGTAGCCGTTGGCTACTATCTAAGCTATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAGTATGCCCCAATTTTATATCaa             >  2:594143/1‑141 (MQ=11)
                                                                                                                                aCTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGATATCGTGATATATCTGAAATATTCAGAGAACGTGGTGTAGACGTTCATCATTCAACGATCTACCGTGGGGTTCAAGAATATGCCCCAATTTTATATCAAAtt          >  2:319659/1‑141 (MQ=11)
                                                                                                                                 cTGTAGCTGTTGGCTAATATCTAAGATATGTATTCAGTTCTAGTGATATATCAGCAATATTATTCTAATGAGATGTAAACGATCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAAttt         >  1:100896/1‑141 (MQ=11)
                                                                                                                                  tggaGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTg        <  1:247570/138‑1 (MQ=255)
                                                                                                                                  tGTAGCTGTTGGCTACTATCTAAGATATGCATGGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTAAACGATCTACAGTCGGGGTCAAGCATATGCCCAAACTATATGTCAAATTTg        >  2:351090/1‑141 (MQ=11)
                                                                                                                                  tGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTg        <  2:582988/141‑1 (MQ=255)
                                                                                                                                   gTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCGTCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTgg       >  2:439082/1‑141 (MQ=21)
                                                                                                                                   gTAGCCGTTGGCTACTATATAAGAGATTCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTgg       >  2:306230/1‑141 (MQ=11)
                                                                                                                                    tAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGga      >  2:361806/1‑141 (MQ=255)
                                                                                                                                    tAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAAATTTAAATCAAATTTGga      >  2:267060/1‑141 (MQ=11)
                                                                                                                                     aGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGgaa     >  1:179311/1‑141 (MQ=255)
                                                                                                                                     aGCCGCTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTTAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGTTCTCACGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGgaa     <  1:304280/141‑1 (MQ=11)
                                                                                                                                       ccGTTGGATAATATCTAAGCTATGCATTGAGCTATCGTTATATATCTGAAATATTAAGAGAACGTGGTATAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATATgtacga   <  2:243730/141‑6 (MQ=11)
                                                                                                                                        cGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGgaagaa  >  1:655494/1‑141 (MQ=255)
                                                                                                                                        |                                                                                                                                            
CAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAA  >  CP000730/76129‑76405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: