| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 111,330 | C→A | 6.0% | Q134K (CAA→AAA) | USA300HOU_0110 → | possible staphylococcal tandem lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 111,330 | 0 | C | A | 6.0% | 308.3 / 4.2 | 108 | Q134K (CAA→AAA) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| Reads supporting (aligned to +/- strand): ref base C (54/46); new base A (2/6); total (56/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.51e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 112 total aligned reads displayed.
AAATGGCAATTCAAAATAAAGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAA > CP000730/111190‑111470 | aaaTGGCAATTCAAAATAAAGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATc > 1:394056/1‑141 (MQ=255) tGGCAATTCAAAATAAAGGAGAAGCTCTAAAAATAAAAGGCATGCATTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑aaa < 1:26676/141‑1 (MQ=255) ggCAATTCAAAATAAAGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATA‑aaaa > 2:315712/1‑141 (MQ=255) aaaaTAAAGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAAAACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATc < 1:528524/141‑1 (MQ=255) aaaaTAAAGGAGAAGCTCTAAAAAAAAAAAGAAAAAATATGAAGATAGATAAAAATACAAGAAGTGCAAAAGGATTTTACTATACTAAAGAAATAAAGACGGAGAACTACGAAGTAGCTAAAAAAAAAA‑AAAAAAAATATc < 2:377548/141‑1 (MQ=255) aTAAAGGAGAAGCTCTAAAAATAAAAGGTATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGAAGGAGAAATACGAAGTAGCGCAGGATAATC‑TAAAAAAATATCCAg < 1:365249/141‑1 (MQ=255) aTAAAGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAg > 1:261911/1‑141 (MQ=255) aTAAAGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCAAg > 1:281513/1‑141 (MQ=255) aaaGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCGGtt > 1:259776/1‑141 (MQ=255) aaaGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGtt > 2:21495/1‑141 (MQ=255) aaaGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATA‑AAAAAAAATATCCAGtt > 1:110156/1‑141 (MQ=255) aaGTAGAAGCAAAAAAAAAAAAAAGAATGCTTTTGAAAAAAGATAGAAATACAGGAAGAGCAAAAGGATGATACTAAACTAATGAAATAAAGACGGAGAAATACGAAGTAGTTAAAAAAAAAA‑AAAAAAAATATCCAGTTa < 2:278720/141‑1 (MQ=255) aaGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCACAGGATAATC‑AAAAAAAATATCCAGTTa > 2:376894/1‑141 (MQ=255) aggagaataaaaaaaaaTAAAAAGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAAAAAAAAA‑AAAAAAAATATCCAGTTaa < 2:534966/129‑1 (MQ=255) aGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTaa < 1:17220/141‑1 (MQ=255) ggAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTaaa > 2:592063/1‑141 (MQ=255) ggAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAATAGCTCAGGATAATC‑AAAAAAAATATCCAGTTaaa > 2:444019/1‑141 (MQ=255) gCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGAtt > 1:140630/1‑141 (MQ=255) ctAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATtaaa > 1:644127/1‑140 (MQ=255) ctAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAAAACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATgaat > 1:288552/1‑141 (MQ=255) tAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATtaata < 1:261667/141‑1 (MQ=255) tAAAAATAAAAGGCATGATTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATtaata < 1:584279/141‑1 (MQ=255) tAAAAAAAAAAGGCATGATTTAGAAGAAAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGATCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATtaata < 2:221292/141‑1 (MQ=255) aaaaaTAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATACAGTTAAAATGATtaataa > 2:387207/1‑141 (MQ=255) aaaaaTAAAAGACATGCTTTTGAAGATAAATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAATACGGAGAAATACGATGTAGTTCAAAATAATC‑AAAAAAAATATCCAGTTAAAATGCTtaataa < 2:408106/141‑1 (MQ=255) aaaaaGAAATGGCATGATTTAAAAGAAAAATAGAAATACAAGAAGTGCAAAAGTATTATACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTAAAAAAAAAA‑AAAAAAAATATCCAGTTAAAATGATtaataa < 2:111903/141‑1 (MQ=255) aaaaTAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATtaataaa > 1:88072/1‑140 (MQ=255) aaaCAAAAGGCATGCGTTTGCAGCAAGAGACAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATtaataata < 2:590751/141‑1 (MQ=255) aaaaaGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAAt < 1:499510/140‑1 (MQ=255) aaaGGCATGCTTTTGAAGATAGCTAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAAGACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTc < 1:329268/141‑1 (MQ=255) aaaGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTc > 2:633585/1‑141 (MQ=255) aaaGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTc > 2:613531/1‑141 (MQ=255) aaaGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTc < 1:619021/141‑1 (MQ=255) aaaGGCATGCTTTTGAAGATACATAGAAACACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTc < 1:329266/141‑1 (MQ=255) aaGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATCAAAAAAAAATATCCAGTTAAAATGATTAAAAATAAAtta > 1:50110/1‑140 (MQ=255) aGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCAt < 1:391381/141‑1 (MQ=255) ggCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCAtt < 1:581776/141‑1 (MQ=255) gCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGGTTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCAttt > 2:427391/1‑141 (MQ=255) tGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTa > 2:322675/1‑141 (MQ=255) gCTTTTGAAGATAGATAGAAATACGAGAAGTGCAAAAGAATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTAc > 1:427202/1‑141 (MQ=255) gCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTAc > 2:349782/1‑141 (MQ=255) gCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑‑AAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTaat > 2:381520/1‑139 (MQ=255) ttttGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTg > 2:174242/1‑141 (MQ=255) agatagatAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAATGATTTCCAGTTAAAATGATTAATATTAAATTTATTTTTACTGAGGAAg > 1:232878/1‑141 (MQ=255) agatagatAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGCAg > 1:538806/1‑141 (MQ=255) aagatagaAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AACAAAAATATCCAGTAAATACGGTTAATAATAAATTCATTTCTACTGAGGAAGTTa < 1:658041/140‑1 (MQ=255) atagaAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAaag < 1:174242/141‑1 (MQ=255) agaAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACCGAGGAAGTTAaagaa > 2:522279/1‑141 (MQ=255) aTACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGaaa < 1:613531/141‑1 (MQ=255) aCAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAAc < 1:146697/141‑1 (MQ=255) aCAAGAAGGGCAAAAGGATTTTACTAGACTAATGAAAGAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAAc < 1:300092/141‑1 (MQ=255) cAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACa > 2:415612/1‑141 (MQ=255) aagTGCAAAAGGATTTTACTAAACTAATGAAATAAACACGGAGGAAAACGAAGCAGCTCAAGATAATC‑AAAAAAAATATCCAATGAAAATGATTAATAATAAATTCATGTCTACTGAGGAAGTTAAAGAAGAAAACATaaa < 2:59205/141‑1 (MQ=255) aagTGCAAAAGGATTGTAATATACAAAGGAAATAAAGACGGAGAAATACAAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAaaaaaaaaaaaa < 2:313618/141‑1 (MQ=255) attGCAAAAGTATTTTACTATACTAATGAAATAAAGACGAAGAAATACGAAGTAGCACAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGaaaaaaaaaaaaaa < 2:177232/139‑1 (MQ=255) agTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATaaaa > 1:169282/1‑141 (MQ=255) gTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATaaaaa > 1:584505/1‑141 (MQ=255) ggCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATaaaaaa < 1:633585/140‑1 (MQ=255) cAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGGTAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAg > 1:283923/1‑141 (MQ=255) aaaaGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGa < 1:520816/141‑1 (MQ=255) aaaGGATTTTACGATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCATTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGaa < 2:488056/141‑1 (MQ=255) aaGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGaaa > 2:282181/1‑141 (MQ=255) gATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCg > 2:493125/1‑141 (MQ=255) gATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCg < 1:273919/141‑1 (MQ=255) gATATTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGTGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCg < 1:25612/141‑1 (MQ=255) tactatactaATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAAc > 1:310084/1‑141 (MQ=255) actatactaATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACt > 2:245025/1‑141 (MQ=255) tatactaATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAACAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACttt < 1:554790/141‑1 (MQ=255) tatactaAGGAAATAAAGACGGAGAAATAACAAGGAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACttt < 1:99409/141‑1 (MQ=255) taATGAAATAGAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTATACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGtt > 1:482886/1‑141 (MQ=255) taATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGtt > 1:615937/1‑141 (MQ=255) aaaTGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGtt < 1:320796/140‑1 (MQ=255) aataaaataaACACGGGCAAACACGAAGTATCTCAAAATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGttt < 2:601369/141‑1 (MQ=37) aTGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGtttt < 1:335298/141‑1 (MQ=255) tGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGttttt < 1:31453/141‑1 (MQ=255) aaaaGAAGGAGAAATAAGAAGTAGCTCAGGATAATC‑CATAAAACTGTAACGTTAAAATTATCAATAATAAATTCATTTCTACTGAGGAATTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTgcgc < 2:140630/140‑1 (MQ=25) aaGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCaa > 1:394270/1‑141 (MQ=255) aaGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTATTTTGCGCaa > 1:74034/1‑141 (MQ=255) aGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAACAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTCAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCaaa > 2:160889/1‑140 (MQ=255) aGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAat > 1:611581/1‑141 (MQ=255) gACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTACGCAata > 2:14872/1‑141 (MQ=255) gACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGATTTTTGCGCAata > 1:184648/1‑141 (MQ=255) cGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAATTTTTTTGTGCAAtata > 2:28139/1‑141 (MQ=255) cGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGAAAaata > 2:209135/1‑141 (MQ=255) gagaAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGc < 1:389239/141‑1 (MQ=255) gagaAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGc < 1:393294/141‑1 (MQ=255) aaaaACGAAGTAGTTCAGGATAATA‑AAAAAAAATATCAAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAAt < 1:74796/141‑1 (MQ=255) aCGAAGTAGCTCAGAATAAGC‑AAGAAAACTATCCAGGTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAACAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTa < 1:376894/141‑1 (MQ=38) gCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTa > 1:110414/1‑141 (MQ=255) gCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGATAAAGAAGAAAACATAAAAAAAGAAATCGAAAACAGTAAGTTTTTTGAGCAAAATAGAAATTTTAAAGATTTa > 2:361528/1‑141 (MQ=37) cTCAGGATAATC‑AAAAACATGATCAAGTCAAAATGAGTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTaa < 1:665728/141‑1 (MQ=37) tCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAACAATAAATGCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAAt > 2:417315/1‑141 (MQ=255) cAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATg > 1:471593/1‑141 (MQ=255) aaaaTC‑AAAAAAAATATACAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAGATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAGTGAAtt < 2:418478/139‑1 (MQ=255) aaTC‑AAAGAAAATATCCAGTTAAAATGATTAATAATAAATACATTGCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATtat < 2:394056/141‑1 (MQ=255) aaTC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATtat < 1:59561/141‑1 (MQ=255) aTC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTTTTTTATTTTTCAATTTTAAAAATTTAATTAATttta > 2:434543/1‑141 (MQ=25) aTC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGTTTATTTTAGAAATTTTAAAGATTTAATGAATtata > 2:180830/1‑141 (MQ=37) tC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATaa > 1:359190/1‑141 (MQ=255) ac‑AAAAAAAATATCCGGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATaa < 2:288552/140‑1 (MQ=255) | AAATGGCAATTCAAAATAAAGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAGACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAA > CP000730/111190‑111470 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |