New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1766474 =	48 (0.870)	4 (0.080)	3/240	NT	8.9%	coding (379/561 nt)	tag	3‑methyladenine glycosidase
	?	CP000730	1766523 =	37 (0.720)					coding (428/561 nt)	tag	3‑methyladenine glycosidase

TGTGCATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1766619‑1766474 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atactgcaaCACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAATTTGC  >  CP000730/1766523‑1766661                                                                                                                                                                                                                                                                                               TGTGCATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATA                                                                                                                                                   >  1:273160/1‑140    GCATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTG                                                                                                                                                >  1:474988/1‑140    GCATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTG                                                                                                                                                >  2:1278/1‑140     CATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGC                                                                                                                                               <  2:149973/140‑1     CATCATATAAACCGGCTGCTGCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGC                                                                                                                                               <  2:150232/140‑1      ATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTACACCCCTATTGGTTTAAATCTTTAGATAGTTGTGTTACAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCA                                                                                                                                              >  1:56842/1‑140      ATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAATCCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCA                                                                                                                                              <  1:410175/140‑1       TCATATTAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCTTATTTTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAA                                                                                                                                             <  1:42439/140‑1       TCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAA                                                                                                                                             <  2:595341/140‑1        CATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGCCCTAAAAATTTAAACCCGGATTGGTTTAAATCTTTAGATAGGTGTGTTGCAGTATCATCAACTGTGATACGGTCAGAAGCATGTTCATACTGCtaa                                                                                                                                            >  2:198914/1‑137                                     AATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTATGATGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAACACAACTATCTAAAGATTTAAAACAATACG                                                                                                               >  1:212944/1‑140                                                                   CCGTATTGTTTTAAATCTTTAGAAAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTAT                                                                                 <  2:212944/140‑1                                                                                                       GTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTGGTTTTTAGAAGCAGCCGGTTTATATGTTGCAC                                             >  1:259972/1‑140                                                                                                       GTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCAC                                             >  1:259975/1‑140                                                                                                                                           TACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATT         <  1:470533/140‑1                                                                                                                                             CTGCAACCCAACTATCTAAAGCTTTAAAACAATACGGGTTTAAATTTTTAGGCCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAA       <  2:324380/140‑1                                                                                                                                             CTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAA       <  2:46490/140‑1                                                                                                                                              TGCAACACAACTATCTAAATATTTAAAACAATGCGGGTTTAGACTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAAT      <  2:118557/140‑1                                                                                                                                              TGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTGTAGGTCCAGTAACAGTATTTGCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAAT      <  2:519678/140‑1                                                                                                                                                  ACACAACTTTTTAAAGATTTAAAACAATATGGGTGTAAATTTTTAGGTCCAGTAACAGTCTTTTCGTGTTTAGAAGCAGCCGGTTTATATGATGCACATTTAGAAGATTGTCCATCAAAGCCTAAACATAATTAATTTGC  <  1:293343/140‑1                                                                                                                                                                                                                                                                                               TGTGCATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1766619‑1766474 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atactgcaaCACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAATTTGC  >  CP000730/1766523‑1766661

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.