New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	37094 =	41 (1.290)	3 (0.100)	3/240	NT	6.8%	coding (21/231 nt)	USA300HOU_0028	hypothetical protein
	?	CP000730	37188 =	45 (1.530)					coding (115/231 nt)	USA300HOU_0028	hypothetical protein

TAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/37218‑37094 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacaaaatcgGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGGTACGTT  >  CP000730/37188‑37326                                                                                                                                                                                                                                                                          TAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCGGTTGTAATTTTCATTT                                                                                                                             >  1:55175/1‑141                AAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTA                                                                                                              <  2:55175/141‑1                                                                             ACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAG                                                 >  2:63504/1‑141                                                                                                                            CGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGGTACGTT  <  2:270482/141‑1                                                                                                                                                                                                                                                                          TAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/37218‑37094 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacaaaatcgGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGGTACGTT  >  CP000730/37188‑37326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.