| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description | 
| RA | CP000730 | 35,850 | C→T | 42.6% | intergenic (+81/+27) | USA300HOU_0025 → / ← USA300HOU_0026 | hypothetical protein/IS431mec transposase | 
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 35,850 | 0 | C | T | 42.6% | 125.4 / 106.9 | 114 | intergenic (+81/+27) | USA300HOU_0025/USA300HOU_0026 | hypothetical protein/IS431mec transposase | 
| Reads supporting (aligned to +/- strand): ref base C (41/23); new base T (22/26); total (64/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.27e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 | |||||||||||
Only 100 of 115 total aligned reads displayed.
CTCATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATA  >  CP000730/35710‑35956                                                                                                                                            |                                                                                                          ctcATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAAc                                                                                                            <  1:341514/141‑1 (MQ=255)               tttAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCAtt                                                                                             >  1:634667/1‑140 (MQ=255)               tgtAATGGTGAAGCTATTGAGTATAAAGGTTTTGGCGAAAAATGATTACTTGAACAAGGGATAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGGAAAGGAAAAAAATATAGCTAACCACTAATTTATCATg                                                                                             <  2:532993/139‑1 (MQ=37)                  aaTGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGAGTACTGGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCa                                                                                          >  1:560485/1‑141 (MQ=255)                     gTAGAAGATATTCAGTATAAAGTTTTTGGCGAAAAATGGTTGCTTGAACAAGAGCTAAAATCAAATTGTGATCTAATAAAAATAGAAGGTGCTGTTGCAAAGTAAAAAAATATAGCTACCCACTAATTTATTATGTAAgtt                                                                                       >  2:425298/1‑140 (MQ=37)                      tAGAAGCTATTCAGTATAAAGTTTTTTTTTTTTTATGATTACTTGAACAAGAGATAAAATAAAATTGTGACCTAATAAAAATAGAAGGTGCTGTTTCAAAGTAAAAAAATATAGCTAACCACTAATTTAGAATGTTAgttt                                                                                      >  2:954048/1‑139 (MQ=25)                      tAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAgtgt                                                                                      <  1:38360/141‑1 (MQ=255)                        gAAGCTATTCAGTATCAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTATGATCTAATAAAAATAGAAGGTACTGTTGCAAAGTCAAAAAAAATAGCTAAACACTAATTTATCaatatgatgttc                                                                                    >  2:822882/1‑130 (MQ=255)                        gAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTc                                                                                    >  1:251378/1‑141 (MQ=255)                        gAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAACACATCATGCTTTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTc                                                                                    >  1:503491/1‑141 (MQ=37)                            cTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCtt                                                                                <  1:728697/141‑1 (MQ=255)                              aTTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTaa                                                                              <  1:575768/141‑1 (MQ=255)                              aTTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTaa                                                                              >  2:863764/1‑141 (MQ=255)                                 cAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCACTTAACtt                                                                           >  2:307110/1‑141 (MQ=255)                                  aGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTg                                                                          >  1:481578/1‑141 (MQ=255)                                    tataAAGTTTTTGGTGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCt                                                                        <  2:701441/141‑1 (MQ=255)                                    tataAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTCCt                                                                        >  2:864405/1‑141 (MQ=255)                                    gataAAGGTTATGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCt                                                                        <  1:981403/140‑1 (MQ=255)                                    aataAAGTTTTTAGCGAAAAAGGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAATAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCt                                                                        <  1:981310/140‑1 (MQ=255)                                        aaGTTTTTGGCGAAAAATGATTATGGGAACAAGAGCGAAAATAAGATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAACAAATATGGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCa                                                                    >  2:228692/1‑141 (MQ=21)                                        aaGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCa                                                                    >  1:535387/1‑141 (MQ=255)                                        aaGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCa                                                                    >  2:302298/1‑141 (MQ=255)                                           tttttGGCGAAAAATGATTACTTGAACAAGAGCTCAAACAAAAGTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCatga                                                                 >  1:1048009/1‑141 (MQ=255)                                             tttGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATCGCTAACCACTAATTTATCATGTCAGTGCTCGCTTAACTTGCTAGCatgatg                                                               <  2:418202/141‑1 (MQ=255)                                               tGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCt                                                             <  1:612994/141‑1 (MQ=255)                                               tGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGGTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCt                                                             >  1:613353/1‑141 (MQ=255)                                                ggCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCCTGTCAGTGTACGCTTAACTTGCTAGCATGATGCTa                                                            >  2:1011866/1‑141 (MQ=255)                                                ggCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTTGCTTAACTTGCTAGCATGATGCTa                                                            >  1:23376/1‑141 (MQ=255)                                                            ttACTTGCACAAGAGCTAAATTAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGAAAAAAAATATAGCTAACCTCTAATTTATCATGTCAGTGTTCGATTAACTTGCTTGCATGATGCTAATTTCGTGGCAt                                                >  1:669136/1‑141 (MQ=18)                                                            ttACATGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAAGATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCAt                                                >  2:733932/1‑141 (MQ=255)                                                                         agCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATGGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGt                                   >  1:649288/1‑141 (MQ=255)                                                                           cTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTCACTTGCTAGCCTGATGCTAATTTCGTGGCATGGCGAAAGCCCGTAg                                 >  2:131953/1‑141 (MQ=255)                                                                            taaaataaaaTTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCCCTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGa                                >  1:18956/1‑141 (MQ=255)                                                                              aaataaaatTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATc                              >  2:820408/1‑141 (MQ=255)                                                                               aataaaatTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCt                             >  1:630667/1‑141 (MQ=255)                                                                                acaaaagagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATGACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGaa                          >  2:711322/15‑141 (MQ=11)                                                                                acaaaagagtattttaataaAAAT‑GATGGGTCTGTTGCAAAGT‑AATAAATATAGCTAATAACTAATATATCATGTCAGTATTCGTTTAAATTGCTAGCATGATGCTAATTTCATGGCATGGGGCAAATCCGCAGATCTGaa                          >  2:514646/15‑141 (MQ=2)                                                                                  aactgagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AATAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAaga                        <  2:728483/129‑1 (MQ=11)                                                                                  aaaagagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAaga                        <  1:878693/129‑1 (MQ=11)                                                                                  aaaagagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAaga                        <  2:855521/129‑1 (MQ=11)                                                                                  aaaagagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAaga                        <  1:679751/129‑1 (MQ=11)                                                                                   aaatTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCATAGATCTggaa                         >  1:891641/1‑138 (MQ=255)                                                                                    aatTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTGATTTATCAGGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAaga                        >  2:908930/1‑141 (MQ=255)                                                                                    aatTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAaga                        >  2:1044580/1‑141 (MQ=255)                                                                                    aagagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAgaga                      <  2:20577/131‑1 (MQ=11)                                                                                     agattattCTAATAAAAAT‑GACGCTTCTGTTGTAAAGT‑AAAAAATATAGCTAATCACCAATATATCCTGTCAGTGTGCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCCGAAgtgaa                     <  2:180925/134‑2 (MQ=11)                                                                                     agagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTCATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGAc                     <  2:936461/132‑1 (MQ=11)                                                                                     agagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGAc                     <  1:359737/132‑1 (MQ=11)                                                                                     agagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTCTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGAc                     <  2:408003/132‑1 (MQ=11)                                                                                      gagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGAcc                    >  1:76510/9‑141 (MQ=11)                                                                                       tgtgATCTAATAAAACTAGAAGGTTCTGTTGCAAAGTAAAGAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGGTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGAc                     <  1:929180/141‑1 (MQ=255)                                                                                       tgtgATCTAATAAAAATAGAACGTTCTACTCAAACGAACAAAAATATAGCCAACCGCTGATTTGTCAGGTCAATTTTCGCTGAACTGTGTACCATTATGCTAATTTCGTGGCAGGGCGAAAATCCGTAGATCTGAAGAGAc                     <  2:354817/141‑1 (MQ=9)                                                                                       agtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTCATCACTAATATCTCATGTCATTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCt                   <  2:377173/134‑1 (MQ=11)                                                                                        gtattttaataaAAAT‑GATGGCTCTGTTGCAAAGT‑AAAAAATATAGCTATTCACGAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTg                  <  1:141559/135‑1 (MQ=11)                                                                                         tattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATATCTAATTACTAATATTTTTTGTTTGTTTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGc                 >  2:706637/6‑141 (MQ=11)                                                                                         tattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGc                 <  2:915771/136‑1 (MQ=11)                                                                                         tattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGc                 <  1:1049656/136‑1 (MQ=11)                                                                                          gagcTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCCGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTg                  <  2:339580/138‑1 (MQ=255)                                                                                          attttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGCTCTGAAGAGACCTCCg                >  2:427998/5‑141 (MQ=11)                                                                                          attttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCg                >  1:415276/5‑141 (MQ=11)                                                                                          attttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCg                <  1:809754/137‑1 (MQ=11)                                                                                          attttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCg                <  1:317039/137‑1 (MQ=11)                                                                                          attttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCg                >  1:752790/5‑141 (MQ=11)                                                                                          attttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCg                >  2:842339/5‑141 (MQ=11)                                                                                           ttttaataaAAAT‑GTTGGTTCTCTTGCAAAGT‑AAAAAATTTAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCgg               <  2:93710/138‑1 (MQ=11)                                                                                           ttttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTGATATATCACGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCgg               <  2:40379/138‑1 (MQ=11)                                                                                           ttttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCgg               <  1:810969/138‑1 (MQ=11)                                                                                           ttttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCgg               <  2:1049545/138‑1 (MQ=11)                                                                                           ttttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTCAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCgg               >  2:1037636/4‑141 (MQ=11)                                                                                           ttttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAAGATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCgg               >  1:559041/4‑141 (MQ=11)                                                                                           ttttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATAGAACTGATCGCTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCgg               >  1:250794/4‑141 (MQ=11)                                                                                           ttttaataaAAA‑GGATGGTTCTGATGCAACAT‑AAAAAATATAGCCAAGCACTAATCTATCATGTCAGTGTTCGTTTAACTTGCTAGCACGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCgg               <  1:298438/138‑1 (MQ=11)                                                                                           aTCTAATAAAAATCGAAGGTTCTTGTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGc                 <  1:286100/141‑1 (MQ=255)                                                                                            tttaataaAAAT‑GATGGTTCTGTTGTAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGt              <  1:128496/139‑1 (MQ=11)                                                                                            tttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGt              <  2:807554/139‑1 (MQ=11)                                                                                            ttcaataaAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCg                <  2:205616/138‑1 (MQ=255)                                                                                             ttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATTGCTAATCGCTAATATATCATGTCAGTGTTCGTTTAACTTGCTCGCATGATGCTAATTTCGTGGCATGGCGAAGATCTGTAGCTCTGTAGGGACCTGCGGtt             >  1:63753/2‑141 (MQ=11)                                                                                             ttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGtt             <  1:331281/140‑1 (MQ=11)                                                                                             ttaataaAAAT‑GATGGTACTGTTGCAAAGT‑AAAAAATATAGCTAATCATTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGtt             <  2:618766/140‑1 (MQ=11)                                                                                             tcatattaaaTAGCTGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCCGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATTGGGAAAATCCGTAGATCTGAAGAGAACTACGGt              >  2:326890/8‑141 (MQ=11)                                                                                             taaaaaaataTAAAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCgg               <  2:634667/136‑1 (MQ=12)                                                                                             cTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGAgg               >  1:339667/1‑141 (MQ=255)                                                                                             cTAATAAAAATAGAAGGTTCTGTAGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTAGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCgg               >  2:759524/1‑141 (MQ=255)                                                                                              taataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGGTCTGAAGAGACCTGCGGTTc            >  2:296800/1‑141 (MQ=11)                                                                                              taataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAGGAGACCTGCGGttt            >  1:223600/1‑140 (MQ=11)                                                                                              taataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTc            <  1:362143/141‑1 (MQ=11)                                                                                              taataaAAAT‑GATGGATCTGTTGCAAAGT‑AAAAATGATAGCTCATCACTAATATATCATGTCAGCGTACGTTGAGCTTGCTAGCATGATGATAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTc            >  1:792935/1‑141 (MQ=11)                                                                                               aataaAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGAATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGtt             >  2:405487/1‑141 (MQ=255)                                                                                               aataaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGtttt           >  1:888645/1‑139 (MQ=11)                                                                                                 taaAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATGTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCt           <  1:411365/141‑1 (MQ=38)                                                                                                 taaAAAT‑GATGGTTCTGTTGCAAAGT‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCttt         <  1:488396/141‑1 (MQ=11)                                                                                                  aaaaatgtgtgggtctcTTGCAAAGT‑AAAAAATTTAGCTAATCACTACTCTCTCATGTCAGTGTTCGTTTAACTTGCTCGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAACAGACCTGCGGTTCttt         <  2:208488/128‑1 (MQ=1)                                                                                                   aaaaTAGAAGGTCCTGTTGCAAAGTAAAAAAATATAGCTAACCCGTAATTTATCATGTCAGTGTTCGCTTAACTTTCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCttt         <  2:545003/141‑1 (MQ=255)                                                                                                    caaatgctggctCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCtttt        >  2:517100/12‑141 (MQ=0)                                                                                                       tAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTtat     <  1:98650/141‑1 (MQ=32)                                                                                                        aGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTtata    <  2:75944/141‑1 (MQ=32)                                                                                                         ggaagtacTGTTTCAGAGT‑AATAAGTATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTtatata  >  2:888788/8‑141 (MQ=1)                                                                                                         gAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTtatat   >  2:213725/1‑141 (MQ=31)                                                                                                          aaGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGGATGGCGCAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTtatata  <  1:727516/141‑1 (MQ=11)                                                                                                          aaGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTtatata  >  1:650425/1‑141 (MQ=11)                                                                                                                                            |                                                                                                          CTCATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATA  >  CP000730/35710‑35956 | 
| Alignment Legend | 
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG | 
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑ |