New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 52495 =62 (0.990)111 (1.780)
+T		 3/256 NT 63.3% intergenic (+105/‑568) USA300HOU_0043/USA300HOU_0044 hypothetical membrane protein/possible transcriptional regulator
?CP000730 = 52988 68 (1.080)intergenic (+598/‑75) USA300HOU_0043/USA300HOU_0044 hypothetical membrane protein/possible transcriptional regulator

Only 100 of 197 total aligned reads displayed.

ATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTT  >  CP000730/52856‑53126
                                                                                                                                    |                                                                                                                                          
atcGTAGTAATCGCGCGAAAATCGAGTGGAAGAAGCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGaa                                                                                                                                     >  1:719540/1‑140 (MQ=255)
   gtagtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAACCATCGTAGTAATCGCGCGAAAATCGCGTGAAATa                                                                                                                                  >  1:158403/1‑140 (MQ=18)
      gtaATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGCAAAACacgtgaaagaata                                                                                                                               <  2:371636‑M2/140‑14 (MQ=255)
          tcgtctgAATATCGCGTCAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGt                                                                                                                           <  2:345934/134‑1 (MQ=255)
            gcgcgAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAg                                                                                                                         <  1:61405/140‑1 (MQ=21)
              gcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGAc                                                                                                                       <  1:74571/140‑1 (MQ=255)
                gAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGGATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACgg                                                                                                                     >  2:523316/1‑140 (MQ=255)
                       gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcg                                                                                                                                           <  1:92136/111‑1 (MQ=11)
                        cgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGGGGAATCGTTTGAAATCATCGTAGGAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTa                                                                                                             >  2:40085/1‑140 (MQ=255)
                          tGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaaa                                                                                                           <  1:615341/140‑1 (MQ=255)
                            aaaTAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAAtt                                                                                                         <  1:692593/140‑1 (MQ=255)
                               ttatcggtggATTCGTTTGGAATTATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAAt                                                                                                      <  1:113730/132‑1 (MQ=17)
                               tacacaacgtaaTCGTTTGAAATCATCGTAGTAATCCCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAAt                                                                                                      <  1:257519/130‑1 (MQ=255)
                                      agGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTCTGGTCGACGGTATGAGTAAATGAATGGAGTAt                                                                                               >  2:543787/1‑140 (MQ=255)
                                          aTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTa                                                                                           >  1:629629/1‑140 (MQ=255)
                                           tCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTaa                                                                                          >  1:402719/1‑140 (MQ=255)
                                              tttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAatat                                                                                       >  1:634641/1‑140 (MQ=255)
                                                              taATCCCGCGAAAATCGCGTGAAATAACCAGAGGAATTGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGaa                                                                       <  2:128880/140‑1 (MQ=255)
                                                               aattgggcgAAAATTGCGTGTATTAATCAGGGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAAt                                                                      <  1:412835/134‑1 (MQ=25)
                                                               aaacgcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGGATTTTAATATTTCTGGTTTGGAGGAAt                                                                      <  1:173208/137‑1 (MQ=255)
                                                               aaTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCATTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAAt                                                                      <  1:472318/140‑1 (MQ=255)
                                                                aTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAAtt                                                                     <  1:246952/140‑1 (MQ=255)
                                                                   ttttgaaaaTAGGGTAAAATAATCAGAGGAATCGTTTTAAAAAATCGTAGAAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagagga                                                                  >  2:293617‑M2/5‑66 (MQ=255)
                                                                     tcaacaattccctgaaataatcataGTAATCGTGTAAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaat                                                                >  2:49723‑M2/13‑64 (MQ=255)
                                                                     gcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGACAATCGCGTGAAATACAATGGTAGAGGGAATGAAGAGATGAATTGAATATTTTAATATATATGGTATGGAGGAATTGCGtt                                                                >  1:235526/1‑140 (MQ=17)
                                                                     gcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGtt                                                                <  1:636946/140‑1 (MQ=255)
                                                                       gAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGAAGACGGTTTGCGTAAATTCGTAAAGGAATTTAATAATTATGGTTTGGAGGAATTGCGTTGc                                                              >  1:560515/1‑140 (MQ=18)
                                                                         aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGCAATACTATGGTAGACAGTTTGAGTAAATTAATGGAGAATTTTAATAATTATAGTATGGAGGAATTGAGTTGcct                                                            >  1:290580/1‑138 (MQ=21)
                                                                          atgcgcgTTAAAGAAGCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATa                                                           <  2:178925/137‑1 (MQ=255)
                                                                          aaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgttt                                                           >  1:86490‑M2/1‑59 (MQ=255)
                                                                          aaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgagaaaatcacgtgaaataatcagaggaatcgttt                                                           >  1:674646‑M2/1‑59 (MQ=255)
                                                                           ttcGCCTGAAATAATCAGAGGATTCGTTTGAAATCATAGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttg                                                          >  2:428627‑M2/2‑58 (MQ=255)
                                                                              atgtgAAATAATCGGTGGAATCGTTTGAAGTCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaa                                                       >  2:609531‑M2/3‑55 (MQ=255)
                                                                               cgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagag                                                                                                                           >  2:442792‑M2/1‑54 (MQ=255)
                                                                               cgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagag                                                                                                                           <  1:442792‑M2/71‑18 (MQ=255)
                                                                                gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaata                                                     <  2:624536‑M2/140‑88 (MQ=255)
                                                                                gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaat                                                                                      <  2:73586‑M2/107‑55 (MQ=255)
                                                                                  gAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcat                                                   >  1:426060‑M2/1‑51 (MQ=255)
                                                                                  gAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGAAGGTTTGAGTACATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGt                                                   >  1:147957/1‑140 (MQ=255)
                                                                                   aaaTAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcg                                                                                             <  1:550226‑M2/97‑48 (MQ=255)
                                                                                   aaaTAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcg                                                                                             >  2:550226‑M2/1‑50 (MQ=255)
                                                                                       aatCAGAGGAATCGCTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtag                                              >  1:661458‑M2/1‑46 (MQ=255)
                                                                                        atCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagt                                             >  2:532891‑M2/1‑45 (MQ=255)
                                                                                        atCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATGTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAatat                                             <  1:497510/140‑1 (MQ=255)
                                                                                        atCAGAGGAATCGTTTGAAAGCATCGAAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaaacgcgcgaaaatcacatcaaataataagaggaatcgttagaaatcatcgtagt                                             <  1:429367‑M2/140‑96 (MQ=255)
                                                                                          cAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATTGAGAAAGTAAatatat                                           <  1:432049/140‑1 (MQ=255)
                                                                                           agagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgaagtaatcgcgcgaaaataacgggatgtaatcaggggaagagtttgaaggcatcggagtaat                                          <  2:61405‑M2/140‑99 (MQ=255)
                                                                                            gagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatgacgggaaataatcagaggaaacgtttgaaatgatcgtagtaatc                                         <  2:637047‑M2/140‑100 (MQ=255)
                                                                                            gagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaa                                                                                                                                     <  2:603819‑M2/48‑8 (MQ=255)
                                                                                             agGAACCGTTTCAAATCATCGAAGTAATCGCGCGTAAATCacgtgaaatagtcagaggaatcgttggaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcg                                        >  1:305739‑M2/1‑40 (MQ=255)
                                                                                              ggAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaaacgg                                       <  2:81803‑M2/140‑102 (MQ=255)
                                                                                              ggAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtaagataatcagaggcatcgtttgaaatcaccgttgtattgtcccgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagaaatcgc                                       <  1:345934‑M2/140‑102 (MQ=255)
                                                                                              ggAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATagag                                       <  1:624536/140‑1 (MQ=255)
                                                                                               gAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataataagaggaatcgtttgagataatagaagtaatcgcg                                      <  2:675758‑M2/140‑103 (MQ=255)
                                                                                                aaTCGTTTGAAATCATCGTAGTAATAGCGAGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcctcgtagtaatcgcgc                                     <  1:352119‑M2/140‑104 (MQ=255)
                                                                                                 tagtttttaaatTATCGTAAAAATGGCGTGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcg                                    >  2:408647‑M2/5‑36 (MQ=255)
                                                                                                 aTCGTTTGCAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGtat                                    <  2:504212/140‑1 (MQ=255)
                                                                                                 aTCGTTTGACATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcg                                    <  1:532891‑M2/140‑105 (MQ=255)
                                                                                                 aTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcg                                    >  2:642240‑M2/1‑36 (MQ=255)
                                                                                                 aTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaa                                                                                       <  1:578284‑M2/89‑54 (MQ=255)
                                                                                                   cGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATaa                                  <  1:276961/140‑1 (MQ=255)
                                                                                                    gTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcag                                                                      <  1:134396‑M2/103‑71 (MQ=255)
                                                                                                    gTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcagcgtagtaatcgagcggaagtcatgggaagtaagcagaggaatcgtttgaaataatagtagtaatcgcggggaa                                 <  2:565282‑M2/140‑108 (MQ=255)
                                                                                                    gTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGCTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTGTAAg                                 >  2:501380/1‑140 (MQ=255)
                                                                                                     tttGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaa                                <  1:389291‑M2/140‑109 (MQ=255)
                                                                                                     tttGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaa                                <  1:456903‑M2/140‑109 (MQ=255)
                                                                                                     tttGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgttt                                                           <  2:370402‑M2/113‑82 (MQ=255)
                                                                                                     tttGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataa                                                                          <  1:191428‑M2/98‑67 (MQ=255)
                                                                                                       ttcaaatctagtaataattgagccaaAATCaggtgaaataatcagaggaatcgttcgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatc                              >  2:421730‑M2/11‑30 (MQ=255)
                                                                                                        gAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtag                                                                                                     <  2:193280‑M2/68‑40 (MQ=255)
                                                                                                           atcatcGTAGTAATCGCGCGAAAATCgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaa                                                                              <  2:39759‑M2/88‑63 (MQ=255)
                                                                                                           atcatcGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataataagaggaatcgtttgaaatcatcgtagtaatggctcgaaaatcacgt                          <  2:615341‑M2/140‑115 (MQ=255)
                                                                                                           aacatagtAGTAATGGCGCAAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgt                          >  2:117296‑M2/3‑26 (MQ=255)
                                                                                                              atcGTAGTAATCGAGTGAAAATCatgtgaaatattttgaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgcgaaattatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaa                       >  1:605412‑M2/1‑23 (MQ=255)
                                                                                                               tcGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgttt                                                           <  2:4645‑M2/103‑82 (MQ=255)
                                                                                                                 gtagtaATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaata                    <  1:642240‑M2/140‑121 (MQ=255)
                                                                                                                  tagtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAgg                   <  2:478301/140‑1 (MQ=255)
                                                                                                                  tagtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAgg                   <  1:681683/140‑1 (MQ=255)
                                                                                                                  tagtaAGCGCGCAAAAATCGCGTGAAATACTAGGGTAGACGGTTTGAGTAAATTAATGGCGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAgg                   <  1:376058/140‑1 (MQ=255)
                                                                                                                   agtaATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgt                                                <  1:69197‑M2/110‑93 (MQ=255)
                                                                                                                   agtaATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgt                                                >  2:69197‑M2/1‑18 (MQ=255)
                                                                                                                   agtaATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgt                                                                                                       <  1:561522‑M2/55‑38 (MQ=255)
                                                                                                                    gtaATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcga                                                                                          <  1:368542‑M2/67‑51 (MQ=255)
                                                                                                                       aTCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcctcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggactcgttttaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcaga              <  1:107201‑M2/140‑127 (MQ=255)
                                                                                                                         cgcgcgAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaat                                                                                      <  2:353762‑M2/66‑55 (MQ=255)
                                                                                                                          gcgcgAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagagga           >  1:479664‑M2/1‑11 (MQ=255)
                                                                                                                           cgcgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTaa          <  2:187621/140‑1 (MQ=255)
                                                                                                                            gcgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAAt         <  2:634641/140‑1 (MQ=255)
                                                                                                                             cgAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagag                                                                    <  2:88338‑M2/80‑73 (MQ=255)
                                                                                                                             cgAAAATCacgtgaaataatcagaggaatcgtttgaaataatcgtagtaatcgcgcgaaaatagcgtgaaataataagaggaatcgtttgaaatcatcgtagtaatagcgcgaaaatcacgtgaaagaatcagaggaatg        <  2:662318‑M2/140‑133 (MQ=255)
                                                                                                                              aaaaatAacgtgaaataatcagaggaaacgtttgaaattagagtaaaaatcgagcgaaaatcacgtgaaataatcagaggaatcgtttgaaagcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcg       >  2:286635‑M2/2‑7 (MQ=255)
                                                                                                                               aaaaTCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgc                                     >  2:570668‑M2/1‑6 (MQ=255)
                                                                                                                               aaaaTCacgtgaaataatcagaggaatcgtttgaaatcatc                                                                                                         >  2:487236‑M2/1‑6 (MQ=255)
                                                                                                                                aaaTCacgtgaaataatgagagcaatcgtttaaaaacatcgtaggaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtt     >  2:222341‑M2/1‑5 (MQ=255)
                                                                                                                                 aaTCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGatat    <  1:121935/140‑1 (MQ=255)
                                                                                                                                 aaTCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGatat    <  1:220666/140‑1 (MQ=255)
                                                                                                                                  aTCacgtgaaataatcagaggaatcttttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttg   >  1:336271‑M2/1‑3 (MQ=255)
                                                                                                                                  aTCacgtgaaataatcagaggaatcgtttgaaataatcgaaataatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttg   >  2:14588‑M2/1‑3 (MQ=255)
                                                                                                                                   tCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGAAAttt  >  1:684765/1‑140 (MQ=255)
                                                                                                                                    cacgtgaaataatcagaggaatcgattgaaatcatcgtagtaatcgcg                                                                                             <  2:26790‑M2/48‑48 (MQ=255)
                                                                                                                                    |                                                                                                                                          
ATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTT  >  CP000730/52856‑53126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.