| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 188,567 | A→T | 5.0% | D143V (GAT→GTT) | cap5O → | capsular polysaccharide biosynthesis protein Cap5O |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 188,567 | 0 | A | T | 5.0% | 231.9 / 2.4 | 84 | D143V (GAT→GTT) | cap5O | capsular polysaccharide biosynthesis protein Cap5O |
| Reads supporting (aligned to +/- strand): ref base A (44/34); new base T (2/2); total (47/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.55e-01 | |||||||||||
TTATGCGTGCATTAGATAGTATTTTATCATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTGTATTGAAGCGGGTAAACGTGTCTATCGCACATTC > CP000730/188429‑188700 | ttATGCGTGCATTAGATAGTATTTTAGCATTTTTAGAAAAAGGAAATACCATTTAGCCAGATTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGat < 1:166576/140‑1 (MQ=255) atacatgaatgcgATAGTATTTAAACATAAAAAAAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGatat < 2:496944/128‑1 (MQ=255) aTGCGTGCATTAGATAGTATTTTATCATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGatat < 1:176524/140‑1 (MQ=255) aTGCGTGCATTAGATAGTATTTTATCATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGatat < 1:632863/140‑1 (MQ=255) gCGTGCATTAGATAGTATTTTATCATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCATAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGAtattt < 1:592835/140‑1 (MQ=255) gCATTAGATAGTATTTTATCATTTCTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATCATTTTGTAAAACCAGTATTTGTAAATGTAGGGTTTACAATAGGTGAAGATatttattt < 1:717079/140‑1 (MQ=255) cATTAGATAGTATTTTATCATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATAtttattta > 1:75259/1‑140 (MQ=255) cATTAGATAGTATTTTATCATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTAAAAAATTAGGGTTTACAATAGGTGAAGATAtttattta > 1:68289/1‑140 (MQ=255) ttAGATAGTATTTTATCATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGt < 2:527403/140‑1 (MQ=255) ttAGATAGTATTTTATCATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGACATTTCTTTAgg < 2:556908/140‑2 (MQ=255) ttAGATAGTATTTGATCATTTTTAGAAAAAGGATATACCATGATGTTAGAGTCGACATGTGCGCATATCACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATATGTGAAGGTATTTATTTAGt < 2:125596/140‑1 (MQ=255) tAGATAGTATTTTATCATTTTTAGAAAAAGGAAATACCATTATTGTAGTGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTg < 2:441481/140‑1 (MQ=255) tAGAAAGTATTTTATCATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATCGCGCCTAAAACGATGGATGATTTTGTAAAAACAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTg < 2:346417/140‑1 (MQ=255) aGATAGTATTTTATCATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGc > 1:622651/1‑140 (MQ=255) aGATAGTATTTTATCATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGc > 2:601928/1‑140 (MQ=255) aGATAGTATTTTATCATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGc > 1:618363/1‑140 (MQ=255) aGATAGTATTTTATCATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTAGACAATTGCGCCTAAAACGAAGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTAAAATAGGAGAAGATATTTAATAAGTGc > 2:343049/1‑140 (MQ=255) aTAGTATTTTATCATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAACATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCAt > 2:397331/1‑140 (MQ=255) gTATTTTATCATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCGGTCATTGAAAATTTAGGGTTTACAATAGGTGAACATATTTATTTAGTGCATTGt < 1:471218/140‑1 (MQ=255) gTATTTTATCATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGt > 2:672213/1‑140 (MQ=255) tttATCATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGTGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAg < 1:497471/140‑1 (MQ=255) tCATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACg > 2:711636/1‑140 (MQ=255) tCATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACg < 2:219516/140‑1 (MQ=255) cATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACgt > 1:459949/1‑140 (MQ=255) aTTTTTAGAAACAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGAGGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACgtg > 1:124506/1‑140 (MQ=255) aTTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGGACgtg > 2:19027/1‑140 (MQ=255) aGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGc > 2:554456/1‑140 (MQ=255) gAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGca > 2:321116/1‑139 (MQ=255) aaaaaGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCa > 1:3562/1‑140 (MQ=255) aaaaGGAAATACCATTATTGTAGAGTCGACAATTGCGCCGAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATATGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAg < 2:380598/140‑1 (MQ=255) aaGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGa < 2:309839/140‑1 (MQ=255) ggAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGaaa < 1:409086/140‑1 (MQ=255) ggAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGaaa < 1:624522/140‑1 (MQ=255) gAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTTTAGTGCCAGGacaa > 2:308995/1‑140 (MQ=255) aaaTACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTAAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGaaaaa > 1:32889/1‑140 (MQ=255) tACCATTTTTGTAGTGTCGACAGTTGCGCCTTTAACGATGGATGATTTTGTATATCTAGTCATTGATAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAAttt < 1:317388/140‑1 (MQ=255) tACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAAatt > 1:546248/1‑140 (MQ=255) tACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGAGAAGATATTTAGTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAAttt > 2:55048/1‑140 (MQ=255) ccatacttGAAGAGTCGACAATTGCGCCTAAAACGATTGATGATTTGGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTa < 2:325977/134‑1 (MQ=255) ccATTATTTGAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTa < 2:631605/140‑1 (MQ=255) cATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGATCGTGTACTGCCAGGAAAAAATTTag > 1:446879/1‑140 (MQ=255) cATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACATGTACTGCCAGGAAAAATtataa > 1:309915/1‑139 (MQ=255) cATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCAAGAACGAATAATGCCAGAATAAATTTTac > 1:70611/1‑139 (MQ=255) cATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGGTTACAATAGGTGAAGATATTTATTTAATGCATTGTACAGAACGTGTACTGCCAGGAAAAAATTTaa > 1:85219/1‑139 (MQ=255) ttattGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTagaa > 1:68755/1‑140 (MQ=255) atgggagattggACAGTTGCGCCGAAAAGGAGGGATGATTTTGTAAAACCATTCATTGAAAATTTAGGGTTTACAATAGGTGAATATATTTATTTAGTGTATCGTCCAGAACGTGTACTGCCAGGAAAAAGTTTagaaga < 2:246057/129‑1 (MQ=255) ttGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACAAGTCATTGAAAATGTAGGGTATAGAATAGGTGAAGATATTTATTTAGTGCATTCTCCAGAACGTGGACTGCCAGGAAAAATTTTAgaagaa > 2:621697/1‑140 (MQ=255) agagTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAACATTTAGGGTTTACAATAGGTGAAGGTATTTATTTAGTGCATTGTTCAGAACGTGTACTGCCAGGAAAAATTTTATAAGAATTAg > 2:107292/1‑140 (MQ=255) gagTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGACTTCGt > 2:24629/1‑140 (MQ=255) gagTCGACAATTGAGACTAAAACGTTGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGt > 2:625423/1‑140 (MQ=255) gagTAGACAATTGCGCCTAAAACGATGGATGATTTTGTAAGACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTGTAGAAGAATTAGt > 1:518631/1‑140 (MQ=255) tCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCa > 2:264995/1‑140 (MQ=255) cGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCAt > 1:643342/1‑140 (MQ=255) gACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGTAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATa < 1:415341/140‑1 (MQ=255) gACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATa < 1:109449/140‑1 (MQ=255) aCAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGTTATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATaa > 2:164711/1‑140 (MQ=255) aCAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGTTATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATaa > 2:164505/1‑140 (MQ=255) ccTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTAt > 1:634049/1‑140 (MQ=255) atgatTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGtgtg > 2:39465/1‑140 (MQ=255) tgaaTTTGTAACACCATGCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGGCCAGAACGTGTACTGCCATGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGa < 2:73589/140‑1 (MQ=255) ttttGGAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTg < 2:162634/140‑1 (MQ=255) tAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTTCAGAACGTGTACTGTCTGGTAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCt < 1:548172/140‑1 (MQ=255) tAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCt > 1:404432/1‑140 (MQ=255) aaaCCATTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTATTTCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAATAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTg < 1:438217/140‑1 (MQ=255) aCCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTGTa > 2:614511/1‑140 (MQ=255) ccAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTGTAt < 1:58381/140‑1 (MQ=255) ccAGTCATTGAAAATTTAGAGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAAAAATAGTATCATTGGTCGTGTGACTGAAGTCTGTAt > 2:218512/1‑140 (MQ=255) ccAGTCATTGAAAAATTAGGGATTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGTTGTGACTGAAGCTTGTAt > 1:379317/1‑140 (MQ=255) aTTGAAAATTTAGGGTTTACAATAGGGGAAGATATTTATTTAGTGCATTGTCCAGAAGGTGTACGGCCAGGAAAAAATTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTCAGACTGCAGCTTGTATTaaacc > 2:113380/1‑138 (MQ=255) ttGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAAAAGTATCATTGGCGGTGTGACTGAAGCTTGTATTGAAGCg > 1:8591/1‑140 (MQ=255) tGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTGTATTGAAGCgg > 2:520739/1‑140 (MQ=255) gAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTGTATTGAAGCggg < 2:87995/140‑1 (MQ=255) aaaaTTTAGCGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGGGACTGAAGCTTGTATTGAAGCggga > 1:532795/1‑139 (MQ=255) aGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTGTATTGAAGCGGGTAAACgtg < 1:601928/140‑1 (MQ=255) cAATAGGTGAAGATATTTATTTGGTGCATTGTCCAGAACGTGTACTGCCAGGAGAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTGTATTGAAGCGGGTAAACGTGTCTATCGc < 2:618363/140‑1 (MQ=255) cAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTGTATTGAAGCGGGTAAACGTGTCTATCGc > 1:613551/1‑140 (MQ=255) aTAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTGTATTGAAGCGGGTAAACGTGTCTATCGcac < 2:365025/140‑1 (MQ=255) tAGGTGAAGTTATTTATTTAGTGCATTGTCCAGAACGTTTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTGTATTGAAGCGGGTAAACGTGTCTATCGcaca < 1:164711/140‑1 (MQ=255) tAGGTGAAGTTATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTGTATTGAAGCGGGTAAACGTGTCTATCGcaca < 1:164505/140‑1 (MQ=255) tAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTGTATTGAAGCGGGTAAACGTGTCTATCGcaca < 1:672213/140‑1 (MQ=255) tAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTGTATTGAAGCGGGTAAACGTGTCTATCGcaca < 2:622651/140‑1 (MQ=255) tAGGTGAAGATATTTACTTAGTGCATTTTCCAGTACGTGTAATGGGCTTAAAAGTTTTAGATGAATTAGTTTATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTGTATTGAAGCGGGTAAACGTGTCTATCGcaca < 1:343049/140‑1 (MQ=255) aGGTGAAGATTTTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTGTATTGAAGCGGGTAAACGCGTCTATCGCACAt < 1:100160/140‑1 (MQ=255) aGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTGTATTGAAGCGGGTAAACGTGTCTATCGCACAt < 1:577004/140‑1 (MQ=255) aGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTGTATTGAAGCGGGTAAACGTGTCTATCGCACAt > 1:590182/1‑140 (MQ=255) aGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTGTATTGAAGCGGGTAAACGTGTCTATCGCACAt < 1:405672/140‑1 (MQ=255) ggTGAAGATATTTATTTCGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTGGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTGTATTGAAGCGGGTAAACGTGTCTATCGAACAtt > 1:103297/1‑140 (MQ=255) gTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATATCAATCGTATCATTGGCGTTGTGACTGAAGATTGTATTAAAGCGGGTAAACGTTTCTATCGCACATTc > 1:35641/1‑140 (MQ=255) | TTATGCGTGCATTAGATAGTATTTTATCATTTTTAGAAAAAGGAAATACCATTATTGTAGAGTCGACAATTGCGCCTAAAACGATGGATGATTTTGTAAAACCAGTCATTGAAAATTTAGGGTTTACAATAGGTGAAGATATTTATTTAGTGCATTGTCCAGAACGTGTACTGCCAGGAAAAATTTTAGAAGAATTAGTTCATAACAATCGTATCATTGGCGGTGTGACTGAAGCTTGTATTGAAGCGGGTAAACGTGTCTATCGCACATTC > CP000730/188429‑188700 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |