New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1755658 =	37 (0.650)	3 (0.060)	3/242	NT	7.9%	intergenic (‑55/+300)	USA300HOU_1643/rpmA	GTP‑binding protein/ribosomal protein L27
	?	CP000730	1755694 =	36 (0.680)					intergenic (‑91/+264)	USA300HOU_1643/rpmA	GTP‑binding protein/ribosomal protein L27

TACATATTTTTCTCTTCTGTATGCGGTAATACCATTACCACCATCACCGGCTTTAAGAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCAACTGTATTCCTTTGTC  >  CP000730/1755520‑1755796                                                                                                                                           |                                                                                                                                              tACATATTTTTCTCTTCTGTATGCGGTAATACCATTACCACCATCACCGGCTTTAAGAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTaga                                                                                                                                             >  1:85855/1‑141 (MQ=255)  gtataagagcccctaatcactaaactataagggggacaaaggaatacagttgcagcgtttaaagaataaactgtaccacaattggtgctgagaaatataagtattttaaagcaaagatttataaaagtaactgcataagag                                                                                                                                            >  1:3082‑M1/138‑141 (MQ=255)    atatTTTTCTCTTCTGTATGCGGTAATACCATTACCACCATCACCGGCTTTAAGAGATATTTTGACTTGATCGACAAACATATATCCCACCTCTTTTACATATAATTTTCATTTTCCCAACAATCACAGCATATTAGAccc                                                                                                                                          >  2:279229/1‑141 (MQ=255)    ataagagcccctaatcactaaactataagggggacaaaggaatacagttgcagcatttaaagaataaactgtaccacaattggtgctgagaagtataggtatttgaaagcaaagatttataaaagtaactgcatgAGAGcc                                                                                                                                          <  1:555433‑M1/6‑1 (MQ=255)      aagagcccctaatcactaaactataagggggacaaaggaatacagttgcagcgtttaaagaataaactgtaccacaattggtgctgataaatataagtattttaaagcaaagatttataaaagtaactgcataAGAGcccc                                                                                                                                        >  1:447492‑M1/134‑141 (MQ=255)           tctcTTCTGTATGCGGTAATTCCATTACCAACATCACCGGCTTTAATAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTtata                                                                                                                                   <  2:294927/141‑1 (MQ=255)           tctcTTCCGTATGCGGTAATACCATTACCACCATCACCGGCTTTAAGAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTtata                                                                                                                                   <  2:229068/141‑1 (MQ=255)                       gCGGTAATACCATTAGCACCATCACCGGCTTTAAGAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑aata‑a                                                                                                                     <  1:107454/141‑1 (MQ=255)                        cGGTAATACCATTACCACCATCACCGGCTTTAAGAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑aata‑at                                                                                                                    <  1:473407/141‑1 (MQ=255)                         ggTAATACCATTACCACCATCACCGGCTTTAAGAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑Att                                                                                                                   <  1:584786/141‑1 (MQ=255)                         ggTAATACCATTACCACCATCACCGGCTTTAAGAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTCCATTTTCCCAAGAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑Att                                                                                                                   <  1:352554/141‑1 (MQ=255)                          gTAATACCATTACCACCATCACCGGCTTTAAGAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTa                                                                                                                  <  1:322295/141‑1 (MQ=255)                               aCCATTACCACCATCACCGGCTTTAAGAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGc                                                                                                             <  2:503948/141‑1 (MQ=255)                                       cgccgggaCCGGCTTTAGTAGTTATTTTGAGTTGATCTACAAACATATATGTCACCTCGTTTACATATAATTTTCATTTTCCTAATAATTATAGCATATTAGAGCCCTTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGc                                                                                                     <  2:500840/134‑1 (MQ=255)                                          caTCACCGGCTTTAAGAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGt                                                                                                  <  2:400937/141‑1 (MQ=255)                                                    tttAAGAGATATTTTGACTTGAGCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTtata                                                                                        <  1:249173/141‑1 (MQ=255)                                                       aaGAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAAt                                                                                     >  2:279923/1‑141 (MQ=255)                                                        agatATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTG‑ATTA‑TTATGAGGCCCTTTTGCAGTTACTTTTATAAAtt                                                                                    >  2:505794/1‑140 (MQ=255)                                                        agagATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATc                                                                                    <  2:660033/141‑1 (MQ=255)                                                              atTTTGACTTGATCGACAAACATATAACTCACCTGTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCTCCTTAGATATTGTT‑AATA‑ATTAGGGGCTCTTATGCAGCTACTTTTATAAATCTTTGC‑t                                                                             <  1:405754/141‑1 (MQ=255)                                                                  tGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATCTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTaa                                                                         >  2:365175/1‑141 (MQ=255)                                                                  tGACCTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTGTTATGCAGTTACTCTTATAAATCTTTGC‑TTTaa                                                                         >  1:454295/1‑141 (MQ=255)                                                                   gACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTaaa                                                                        >  2:647865/1‑141 (MQ=255)                                                                       actgtaccacaattggtgctgagaaatataagtattttaaagcaaagatttataaaagtaactgcataAGAGCCCCTAAT‑TATTTAA‑AATATATAAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTAAAATAc                                                                    <  1:198253‑M1/73‑1 (MQ=255)                                                                        gctctataaaCATATATCACACCTTCTTTACTTATAATTTTCACTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATCTTGTA‑AATA‑ATTAGGGGCTCTTATGCAGATACTTTTATAAATCTTTGC‑TTTAAAATACt                                                                   <  2:163439/134‑1 (MQ=255)                                                                        gATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTAAAATACt                                                                   >  2:272881/1‑141 (MQ=255)                                                                        gATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAAAAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCCGTTACTTTTATAAATCTTTGC‑TTTAAAATACt                                                                   >  2:571383/1‑141 (MQ=255)                                                                                                ctTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTTAAAATACTTATATTTCTCAGCACCAATtgtg                                            >  2:127555/1‑141 (MQ=255)                                                                                                     aCATATAATTTTCATTTTCCCAGTAATTATAGCATATTAGAGCCCCTTATATCTTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAACACGTTGC‑TTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAg                                      >  1:452844/1‑141 (MQ=255)                                                                                                      gtattttaaagcaaagatttataaaagtaactgcataAGAGCCCCTAAT‑TATTTAC‑AATATATAAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGt                                     >  2:198253‑M1/38‑141 (MQ=255)                                                                                                         ataATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTAAAATACTTATATTTCTCATCACCAATTGTGGTACAGTTTa                                  <  1:662783/141‑1 (MQ=255)                                                                                                         ataATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTa                                  >  1:178335/1‑141 (MQ=255)                                                                                                             ttttcattttcCCAATACTTATAGCATATTAGAGCCCCTTATCGATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTAATTTTATTAATAATGCA‑TTTAAAATGCTTGACGTTCTCAGCACCAATTGTGGTACAGTTTATTCt                              <  2:471133/141‑1 (MQ=255)                                                                                                             ttttcattttcCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCt                              <  1:152384/141‑1 (MQ=255)                                                                                                              tttcattttcCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCtt                             <  1:620484/141‑1 (MQ=255)                                                                                                                    tttcCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACg                       >  1:357420/1‑141 (MQ=255)                                                                                                                       cccAATAATTATAGCATATTAGAGCCCCTTATATATTGTC‑AATA‑ATAAATAATACAAATGCAGAAAATGATACGAGTCGTTGC‑TTTAAAATATTGATATTTCTCTGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTg                    >  1:658557/1‑141 (MQ=255)                                                                                                                           ataatTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCAAc                <  1:609289/141‑1 (MQ=255)                                                                                                                           ataatTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCAAc                <  1:279923/141‑1 (MQ=255)                                                                                                                            aaatTATACCTTTTTAGGGCCCC‑TATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCAACTg              <  1:121185/140‑1 (MQ=255)                                                                                                                                gtaactgcataAGAGCCCCTAAT‑TATT‑TACAATATATAAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCACCCGTAt           <  2:28747‑M1/130‑1 (MQ=255)                                                                                                                                   aGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCAACTGTATTcc        <  2:85913/141‑1 (MQ=255)                                                                                                                                     cagatTAGTGCCCCTTTTTGATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAAGCTTTGC‑TTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCAACTGTATTCCtt      <  1:59116/138‑1 (MQ=255)                                                                                                                                     cATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTAAAATACTTATATTTCTCAGCACCTATTGTGGTACAGTTTATTCTTTAAACGCTCCAACTGTATTCCtt      <  1:365175/141‑1 (MQ=255)                                                                                                                                     cATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCAACTGTATTCCtt      <  2:665202/141‑1 (MQ=255)                                                                                                                                       tatTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCAACTGTATTCCTTTg    <  2:71714/141‑1 (MQ=255)                                                                                                                                        atTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCAACTGTATTCCTTTGt   <  1:380177/141‑1 (MQ=255)                                                                                                                                         ttAGAGCCCCTTATATATTGGA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCAACTGTATTCCTTTGTc  <  2:662272/141‑1 (MQ=255)                                                                                                                                           |                                                                                                                                              TACATATTTTTCTCTTCTGTATGCGGTAATACCATTACCACCATCACCGGCTTTAAGAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTA‑AATA‑ATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGC‑TTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCAACTGTATTCCTTTGTC  >  CP000730/1755520‑1755796

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.