| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 2,107,541 | A→T | 4.3% | V256D (GTT→GAT) | USA300HOU_1970 ← | possible bacteriophage portal protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 2,107,541 | 0 | A | T | 4.3% | 277.0 / 3.3 | 94 | V256D (GTT→GAT) | USA300HOU_1970 | possible bacteriophage portal protein |
| Reads supporting (aligned to +/- strand): ref base A (43/47); new base T (2/2); total (45/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.89e-01 | |||||||||||
TATGAGTTTCGCGTTTAATTCGTTCTGAATCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCAAAGGCGCGATTGCTAGTTGATTTTTATTAAAAGTAT > CP000730/2107402‑2107679 | tATGAGTTTCGCGTTTAATTCGTTCTGAATCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAAc < 1:436817/141‑1 (MQ=255)tATGAGTTTCGCGTTTAATTCGTTCTGAATCTTTTTTAATAAAGATGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCTAGTCAGCTGTTTCTCCGTAAAGCAAACCTGGAGGTATACAAAACATCAACGCAAc > 2:367586/1‑141 (MQ=255) gAGTTTCGCGTCTAATTCGTTCTGAATCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACAtt < 1:415683/141‑1 (MQ=255) tccccgttAATTCGTTCCTGATCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTa < 1:45428/135‑1 (MQ=255) tCGCGTTTAATTCGTTCTGAATCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGCATACCCAACATCAACGCAACATTTTTTa > 2:53747/1‑141 (MQ=255) tgcgTTTAATTCGTTCTGAATCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTAt < 1:407268/140‑1 (MQ=255) cgTTTAATTCGTTCTGAATCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATTCAATCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCACTCATCAACGCAACATTTTTTTTTg > 2:367325/1‑141 (MQ=255) cgTTTAATTCGTTCTGAATCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACCTTTTTTATTg > 2:618859/1‑141 (MQ=255) cgTTTAATTCGTTCTGAATCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTg < 1:5260/141‑1 (MQ=255) cgTTTAATTCGTTCTGAATCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTg > 2:200634/1‑141 (MQ=255) cgTTTAATTCGTTCAGAATCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAACAATCAACGCAACATTTTTTATTg > 1:437080/1‑141 (MQ=255) gTTTAATTCGTTCTGATTCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGc < 1:273213/141‑1 (MQ=255) gTTTAATTCGTTCTGAATCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGc < 1:440864/141‑1 (MQ=255) gTTTAATTCGTTCTGAATCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGc < 2:120396/141‑1 (MQ=255) tAATTCGTTGTGAATCTTTTTTAATAAAGGTGTTTTGGGACATTACTCGAATACTAGATAGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATCCCAATCATAAACGCAACATTTTTTATTGCGtc > 1:488786/1‑141 (MQ=255) aTTCGTTCTGAATCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCAtctc > 1:212310/1‑141 (MQ=255) ttCGTTCTGAATCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCAtctct > 1:9720/1‑141 (MQ=255) ttCGTTCTGAATCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAACGTGTGCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCCTCAACTCAACATTTTTTATTGCAtctat > 2:98508/1‑139 (MQ=255) gTTCTGAATCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCATCATTTTTTATTGCATCTCTCAt > 2:295588/1‑141 (MQ=255) gTTCTGAATCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCAt > 1:442495/1‑141 (MQ=255) gTTCTGAATCTTTTTTAATAAAGGTGTTAAACAGAACAGCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCATCATTTTTTATTGCATCTCTCAt > 2:439713/1‑141 (MQ=255) gtCTGAATCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCAtt < 2:127492/140‑1 (MQ=255) aTCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGctca < 1:118516/141‑1 (MQ=255) tCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTCTTATTGCATCTCTCATTAGctcac < 1:487609/141‑1 (MQ=255) tttttCATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGctcactca < 1:200634/141‑1 (MQ=255) ttAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGTGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAAtt < 1:403120/141‑1 (MQ=255) taataaAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTc > 2:112574/1‑141 (MQ=255) ataaAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAg < 1:143243/141‑1 (MQ=255) ataaAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAg < 2:589510/141‑1 (MQ=255) aaaGTTGTTCAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCCGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGaa < 2:361884/141‑1 (MQ=255) ttAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCCAAATAAGGCa < 1:489957/141‑1 (MQ=255) ttAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTGTTTATTGCACCTCCCATAAGCTCACACAATTCAGAAAAAGGCa > 1:10135/1‑141 (MQ=255) tAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAAAACGTCGCCTATCTGTAAATCAAACCTGGAGGGATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCAt < 1:151421/141‑1 (MQ=255) aaaCAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATg < 1:333597/141‑1 (MQ=255) aaCAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGt > 2:319747/1‑141 (MQ=255) aaCAGAACTTCTCAAATACAAGCGTGTTCTTTTCACAATCAGCTGTTACTCCGTCAATCAAACATGGAAGCATAGCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCCGAACAAGGCATGt > 2:111235/1‑141 (MQ=255) cAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTa > 1:417784/1‑141 (MQ=255) cAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCACCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATCTTa > 1:606086/1‑141 (MQ=255) aaCTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTa < 2:240117/141‑1 (MQ=255) ttCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTCTCTCCGTAAATCAAACCTGGAGGTATACCAATCAACAACGCAACATTTTTTATTGCATCTCTCATTAGCTAAAAAAAAAAAAAAAAAGGCATGTTACTATTc < 2:503305/141‑1 (MQ=255) ctcccAAATACAAGCGTGTTCTTCAACACATCAGCTGGCTCCCATTATATCAAACCTGCGTGTATACCAATCATCAACGCGATATTTTTTATTGCATCTCTCATTCGCTTAATCAACTCAGAAAAAGGCATGTTACTATTc < 2:564052/137‑1 (MQ=255) tctcAAATCCAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCt < 1:14154/141‑1 (MQ=255) tctcAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCt > 2:382951/1‑141 (MQ=255) tctcAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCt > 1:63164/1‑141 (MQ=255) tctcAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCCCACTCAATTCAGACAAAGGCATGTTACTATTCt > 2:336244/1‑141 (MQ=255) tctcAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATAGCATGTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCt > 1:124067/1‑141 (MQ=255) tctcAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTACTCCGTAAAGCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCt < 2:69661/141‑1 (MQ=255) ctcAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAGGCCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCtt < 1:549140/141‑1 (MQ=255) ctcAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCtt > 1:498736/1‑141 (MQ=255) tcAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTa > 2:351687/1‑141 (MQ=255) cccaacaCAACCGTGTTCTTTTCCAAATCAGCTGTTCCTCCGTAAATCAATCCTGGAGGGATACCAATCATCAACGCAACATTTGTTCTTGCATCTCGCCTTAGCGCACTCAATTCAGCAAAAGGCATGTTACTATTCTTa < 2:562255/135‑1 (MQ=255) caCAAGCGTGTCCTTTTCCAAACCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCCCATTAGCTCCCACAATTCATAAAAAGGCATGTTACTATTCTTaccacc < 1:660990/140‑1 (MQ=255) aGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTa < 1:499639/141‑1 (MQ=255) gCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTaa > 1:49547/1‑140 (MQ=255) gCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAg > 1:90519/1‑141 (MQ=255) gCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGATAATATTCTTACCACCATTaa > 2:211509/1‑140 (MQ=255) cGTGTTCTTTTCCAAATCAGCTGGTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGa > 2:172678/1‑141 (MQ=255) gtgtTTTTTTCCAAATCAGCTGTTTCTCCGTAAACCAACCCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGAt < 1:62360/141‑1 (MQ=255) tgctCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAACCCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATa < 1:374982/138‑1 (MQ=255) ggtTCTTTGCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATa < 1:81438/140‑1 (MQ=255) tCTTTTCCAAATCCGCTGTTGCTCCGTACAGCAAACCTGGAGGTTTCCCACTCATCACCGCAACATTTTTTATTGCATCTCTCATTTGCTCACTCAATGCAGCAAAAGGAATGGTACTATTCTTACCACCATTTGATAAtt < 2:182760/141‑1 (MQ=255) tCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAAtt > 1:653517/1‑141 (MQ=255) tCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTACATAAtt > 1:189237/1‑141 (MQ=255) tttCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCt > 1:510306/1‑141 (MQ=255) tttCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCt > 1:305235/1‑141 (MQ=255) tCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCa < 2:343387/141‑1 (MQ=255) aTCAGCTGTTTCTCCGTAAATCAAACCTGTAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATc < 1:193433/141‑1 (MQ=255) aGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATCATTCCTCATAATCaaa > 2:21721/1‑141 (MQ=255) ctcCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCGATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTa > 2:497275/1‑141 (MQ=255) ccGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATACCTCATAATCAAAACCTTCTATc < 1:286105/141‑1 (MQ=255) cGTAAATCAAACCTGGAGGTATACCAATCATCAACGCATCATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCa < 1:439713/141‑1 (MQ=255) cGTAAATCAAACCTGGAGGTATACCAATCATCAACGCATCATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCa < 1:295588/141‑1 (MQ=255) aTCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCAAAGgc < 1:653255/141‑1 (MQ=255) aaCCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCAAAGGCGCGa > 2:236833/1‑141 (MQ=255) aaCCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCAGGTCGCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTCTCAAAGgcgcta > 2:439232/1‑139 (MQ=255) gAGGTATACCAATCATCAACGCAACCTTGTTTGTTTCATGGCTCATTAGCTCACCCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCAAAGGCGCGATTGCTa < 1:88664/141‑1 (MQ=255) gAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCAAAGGCGCGATTGCTa < 1:319747/141‑1 (MQ=255) tataCCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATC‑AAACCTTCTATCAAAGGCGCGATTGCTAGTTGa < 2:444378/141‑1 (MQ=255) acaCCAATCATCAACGCAACATTTTTTATTTCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCAAAGGCGCGATTGCTAGTTGa < 2:106705/139‑1 (MQ=255) cAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCAAAGGCGCGATTGCTAGTTGAtttt > 1:62456/1‑141 (MQ=255) cAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCAAAGGCGCGATTGCTAGTTGAtttt < 1:163089/141‑1 (MQ=255) aaTCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCAAAGGCGCGATTGCTAGTTGAttttt < 1:282347/141‑1 (MQ=255) catcaACGCAACATTTTTTATTGCATCTAAATTTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCAAAGCCGCGATTGCTGGTTGATTTttatt > 2:611918/1‑141 (MQ=255) catcaACAAAACATTTTTTATTGCGCCTTTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCAAAGGCGCGATTGCTAGTTGATTTttatt < 2:498736/141‑1 (MQ=255) tcaACGCAACCTTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCAAAGGTGCGATCGCTACTTGATTTTTATTaa < 1:367586/141‑1 (MQ=255) tcaACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCAAAGGCGCGATTGCTAGTTGATTTTTATTaa > 1:495898/1‑141 (MQ=255) caACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCAAAGGCGCGATTGCTAGTTGATTTTTATTaaa > 1:308589/1‑141 (MQ=255) caACGCAACATTTTTTATTGCATCTCTCATTAGCTAAATCCATTCAGAAGAATGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCAAAGGCGCGATTGCTAGTTGATTTTTATTaaa < 1:549301/141‑1 (MQ=255) caACGCAACATTTTTTATTGCAGCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCAAAGGCGCGATTGCTAGTTGATTTTTATTaaa < 1:47809/141‑1 (MQ=255) aaCGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAACAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCAAAGGCGCGATTGCTAGTTGATGTTTATTaaaa > 2:38038/1‑141 (MQ=255) aCGCAACATTTTTTATTGTATTTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTATTACCACCATTAGATATTTCGTCCTCATCCAAACCTTCTACATAAGTCTAGCTTACTTGTTGATTTTTCTTataat > 2:647713/1‑140 (MQ=255) cGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCCGCAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCACAACCTTCTATCAAACGCGCGATTGCTAGTTGTTTTTTATTCACAGt > 1:569251/1‑141 (MQ=255) gCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCAAAGGCGCGATTGCTAGTTGATTTTTATTAAAAGTa < 1:644340/141‑1 (MQ=255) cAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCAAAGGCGCGATTGCTAGTTGATTTTTATTAAAAGTAt > 1:425604/1‑141 (MQ=255) | TATGAGTTTCGCGTTTAATTCGTTCTGAATCTTTTTTAATAAAGGTGTTAAACAGAACTTCTCAAATACAAGCGTGTTCTTTTCCAAATCAGCTGTTTCTCCGTAAATCAAACCTGGAGGTATACCAATCATCAACGCAACATTTTTTATTGCATCTCTCATTAGCTCACTCAATTCAGAAAAAGGCATGTTACTATTCTTACCACCATTAGATAATTCCTCATAATCAAAACCTTCTATCAAAGGCGCGATTGCTAGTTGATTTTTATTAAAAGTAT > CP000730/2107402‑2107679 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |