New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	512620 =	56 (1.140)	32 (0.950) +TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAA	27/180	NT	45.3%	intergenic (+688/‑173)	recR/rrs1	recombination protein RecR/16S ribosomal RNA
	?	CP000730	1998278 =	NA (NA)					intergenic (‑6/+5)	USA300HOU_t0050/rrf4	tRNA‑Val/5S ribosomal RNA

GATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTATAC  >  CP000730/1998141‑1998418                                                                                                                                          |                                                                                                                                             gATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTaaaa                                                                                                                                           >  2:472739/1‑141 (MQ=38)      aaaGTCAGTTGCTCGACCAAGTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGcc                                                                                                                                      <  2:3801/140‑1 (MQ=255)           cAGTTGCTCTACCAATTGAGCTAGGCCGGCAAGATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATGTCAAACTGCCTGGCa                                                                                                                                 >  2:452380/1‑141 (MQ=255)                  tctACCCATTGGGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCt                                                                                                                          <  1:168552/141‑1 (MQ=255)                  tctACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGGATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTATCCGATTTAAAACTGCCTGGCAACGTTCt                                                                                                                          >  1:318283/1‑141 (MQ=255)                            gAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCgg                                                                                                                <  1:223705/141‑1 (MQ=255)                            gAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGGTCTACTCTAGCgg                                                                                                                >  1:471827/1‑141 (MQ=255)                             ggCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGACCCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGa                                                                                                               <  2:488113/140‑1 (MQ=255)                              gcaaGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGATCCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGaa                                                                                                              <  1:264667/138‑1 (MQ=255)                              gCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGaa                                                                                                              <  1:29894/141‑1 (MQ=255)                                tAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACg                                                                                                            <  1:326216/141‑1 (MQ=255)                                caGGCCGGGAATATGTAAGAATAAATGGTGGAGAATGATGGGCTGAAACAGCTGTTGATGGACATGAAAGACAGCTCCTCTCCAAGCTTTATTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACg                                                                                                            <  2:395671/140‑1 (MQ=12)                                         aaTATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGa                                                                                                   >  1:42292/1‑141 (MQ=255)                                         aaTATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGa                                                                                                   >  2:289370/1‑141 (MQ=255)                                         aaTATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGa                                                                                                   >  1:82726/1‑141 (MQ=255)                                          atatGTAAGAATAAATGGTGGAGAAAGACGGGTTCGAACCGCCACACCTCATCATGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGAc                                                                                                  <  1:550156/141‑1 (MQ=17)                                            atGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTa                                                                                                >  2:500906/1‑141 (MQ=255)                                             tGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAc                                                                                               <  1:113468/141‑1 (MQ=255)                                              gTAAGAATAAATGGTGGAGAATGACGGGTTCGCACCCCCGACCCTCTGCTTGTGAGGCAGAAGCTCTCCCACCTGAGCTAATTCTCCGATTTAAAACTGCCTGACACCGTTCTCCTCTAGCGGAACGTAAGTTCCACTTcc                                                                                              >  2:427126/1‑141 (MQ=14)                                              gTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAcc                                                                                              >  1:149635/1‑141 (MQ=255)                                              gTAAGAATAAATGGTGGAGAAAGACGGGTTCGAACAGCCAACCCTCTGCTTGTAAGGCAGATACTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTAGCAACGTTCTACTCGAGCGGAAAGTAAGTTCGACTAcc                                                                                              >  1:116782/1‑141 (MQ=14)                                                      aaaTGGTGGAGAATGACGGCTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGc                                                                                      >  1:307960/1‑141 (MQ=255)                                                         tggtggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTACTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTaa                                                                                   <  1:385101/141‑1 (MQ=255)                                                              gagaGTGCCGGGTTCGATCCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCGATCCGAGCTAATTCTCCGATTTAAATCTGCCGGTCAACGTTCTACTCTAGCGGAGCGTAAGTTCGACTACCATCGACGCTAATGAGc                                                                              <  2:171091/141‑1 (MQ=14)                                                                   tGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAAc                                                                         <  1:258611/141‑1 (MQ=255)                                                                    gACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGATCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTCCTCTAGCGTAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACt                                                                        >  1:109535/1‑141 (MQ=255)                                                                    gACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGGGCTTAACt                                                                        >  2:67482/1‑141 (MQ=255)                                                                     aCGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACtt                                                                       >  2:510738/1‑141 (MQ=255)                                                                     aCGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTATCCCCGCTGAGCTAATTCTCCGATTTCAAACTGCCTGGCAACGTTATACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACtt                                                                       >  2:468105/1‑141 (MQ=255)                                                                       gggTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCGTCGACGCTAAGGGGCTTACCTTCt                                                                     >  1:285076/1‑141 (MQ=255)                                                                       gggTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCt                                                                     >  1:176675/1‑141 (MQ=255)                                                                       gggTTCGAACCGCCGACCCCCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTTGCGGAAGGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCt                                                                     <  2:363935/141‑1 (MQ=255)                                                                        gtgtCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCtg                                                                    <  2:405871/138‑1 (MQ=255)                                                                           tCGTACCGCCCACCCTCTGCTGGCTAGGCTCATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTgtgt                                                                 <  2:438055/141‑1 (MQ=14)                                                                            cGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGtt                                                                >  1:119231/1‑141 (MQ=255)                                                                               aCCGCCGACCCTCTGCTTGTAAGGCAAATGCTCTCCCAGCTGAGCTATTTCTCCGATTTAAAACTGCCTGGCAACGGTCTACGCTAGCTGAACGTAAGTTGGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCgg                                                             <  2:468419/141‑1 (MQ=14)                                                                                ccgccgACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGc                                                            >  1:447792/1‑141 (MQ=255)                                                                                ccgccgACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGc                                                            <  2:559641/141‑1 (MQ=255)                                                                                   ccgACCCTCTGCTTGTAAGGCAGATGCCCACCCAGCTGACCTAATTCTCCGATGTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGGAAGTTCGACTACCATCGACGCTAAGGAGCTGAACTTCTGTGTTCGGCATg                                                         >  2:232628/1‑141 (MQ=14)                                                                                     gACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGTCTACCATCGACGCTAAGGTGCTTATCTTCCGTGTTCGGCATggg                                                       <  1:306950/141‑1 (MQ=255)                                                                                     gACCCTCTGCTTGTAAGGCAGATGCGCTCCCAGCTTAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATggg                                                       <  1:213397/141‑1 (MQ=255)                                                                                      ccccTCCGCTTGTAAGGCAGGTGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCCTCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGa                                                      <  2:538495/140‑1 (MQ=255)                                                                                       cccTCTGCTTGTAAGGCCGATGGTCTCCCAGCTGGGCTTGTTCTTCGATGGTGAGCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGaa                                                     <  1:181741/141‑1 (MQ=11)                                                                                       cccTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGaa                                                     >  1:550688/1‑141 (MQ=255)                                                                                        ccTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGCCTACCATCGACGCTAAGGGGCTTAACTTCTGTGTTCGGCATGGGAAc                                                    >  1:220102/1‑141 (MQ=255)                                                                                         ctctGCTTGTAAGATAGATGCTCCCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACa                                                   <  2:508077/141‑1 (MQ=255)                                                                                          tctGCTTGTAAGGCAGATGCTCTCTCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCAAAAAACAAATAATGGCGTCTACCAGCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGGACAg                                                  >  1:266384/1‑141 (MQ=14)                                                                                           ctGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTTCTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAgg                                                 <  1:472739/141‑1 (MQ=255)                                                                                                     ggCAGGTTCTCGCCCAGCTGAGCTAATTCTCCGATTTAAATCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcctcc                                       <  2:36955/141‑1 (MQ=255)                                                                                                      gCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTTCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcctcct                                      >  2:280227/1‑141 (MQ=255)                                                                                                       cAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACAGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCtt                                     >  1:401387/1‑141 (MQ=255)                                                                                                        agagGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCtt                                     <  2:274086/140‑1 (MQ=255)                                                                                                        aGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAGCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCtt                                     >  1:274098/1‑140 (MQ=255)                                                                                                        aGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAGCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCtt                                     <  2:274098/140‑1 (MQ=255)                                                                                                        aGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCtt                                     >  1:274086/1‑140 (MQ=255)                                                                                                          aTGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTAGTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTCAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACATCCTTGCt                                  <  2:415060/141‑1 (MQ=255)                                                                                                          aTGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCt                                  >  1:398611/1‑141 (MQ=255)                                                                                                           tGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCta                                 >  2:116911/1‑141 (MQ=255)                                                                                                           tGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCta                                 <  2:307960/141‑1 (MQ=255)                                                                                                                  ccAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTCACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTccc                          >  2:44173/1‑139 (MQ=255)                                                                                                                       tGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATCGTCACCAGAc                     >  1:537475/1‑141 (MQ=255)                                                                                                                          gCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACata                  >  1:389908/1‑141 (MQ=255)                                                                                                                            tAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATg                >  1:451588/1‑141 (MQ=255)                                                                                                                            tAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGGGACCTCCGCGCTATAGTCACCAGACATCTg                >  2:89491/1‑141 (MQ=255)                                                                                                                             aaTTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGa               >  1:480914/1‑141 (MQ=255)                                                                                                                               ttCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAAt             <  2:149635/141‑1 (MQ=255)                                                                                                                               atccccGTTTTAAAACTGCCTGGCAACGTTCTACTCCAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAAt             <  2:116782/137‑1 (MQ=255)                                                                                                                                       tttAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTta     <  1:500906/141‑1 (MQ=35)                                                                                                                                          aaaaCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATGGGCCCCAGACGTATGAATGTAATTTATAc  >  1:476622/1‑141 (MQ=255)                                                                                                                                          aaaaCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTATAc  >  1:161090/1‑141 (MQ=33)                                                                                                                                          |                                                                                                                                             GATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTATAC  >  CP000730/1998141‑1998418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.