New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2085296 =31 (1.170)29 (1.220) 25/230 NT 58.8% intergenic (‑558/‑400) mapW2/USA300HOU_1944 cell surface protein MapW2/hypothetical protein
?CP000730 = 2128343 13 (0.550)intergenic (+57/+1062) int/USA300HOU_2011 bacteriophage integrase/possible leukocidin subunit

AAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTT  >  CP000730/2085158‑2085434
                                                                                                                                          |                                                                                                                                          
acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTg                                                                                                                                           <  2:142183‑M1/2‑1 (MQ=255)
 catccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaaaccaataaatacgattgttacaaggttacaaTGt                                                                                                                                          <  1:249814‑M1/3‑1 (MQ=255)
      gtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCa                                                                                                                                     <  1:147565‑M1/8‑1 (MQ=255)
       tgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCaa                                                                                                                                    <  2:204187‑M1/9‑1 (MQ=255)
       tgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtgtctaTGTATCCaa                                                                                                                                    <  2:286414‑M1/9‑1 (MQ=255)
         cAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAAc                                                                                                                                  <  1:160495/140‑1 (MQ=255)
          attctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACt                                                                                                                                 >  1:183187‑M1/129‑140 (MQ=255)
           ttcacatttgtgaaaagaaaaatttaaagaagaagacaaaaaaacaactaaaaatttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTg                                                                                                                                >  1:275482‑M1/128‑140 (MQ=255)
                atttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGAc                                                                                                                           >  2:250922‑M1/123‑140 (MQ=255)
                    ttAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACtttt                                                                                                                       <  1:249002/140‑1 (MQ=255)
                    gttaaaagaaaaattaaatgacgaagacaaaaaaacaactaaaattttagaaagtatgtaacttatggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACtttt                                                                                                                       >  2:111568‑M1/119‑140 (MQ=255)
                    ctAGCAAATTTATTATTAGTTGGTGCTCTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAATATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTCATCTACCGTTTTGTATCCAAACTGGAGACtttt                                                                                                                       <  2:158953/139‑1 (MQ=255)
                       gCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAATATGATACTGATTTGAAGTTAGTTACTCATAACGTTTATATGTTATCGACCCTTTTGTACCCAAACTGGAGACTTTTAAc                                                                                                                    <  1:207036/140‑1 (MQ=255)
                        gaagaaaaatttaatgaagcgtacaaaaaaacatttaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACa                                                                                                                   >  1:6677‑M1/115‑140 (MQ=255)
                         aagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACAt                                                                                                                  >  1:207934‑M1/114‑140 (MQ=255)
                           aTTTATTATTAGTTGGTGCACTTACTGAAAATAGTGCCAAAGCCGAAACTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATaa                                                                                                                <  1:137923/140‑1 (MQ=255)
                            tttATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCGAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATTCAAACTGGAGACTTTTAACAGaaa                                                                                                               >  1:57990/1‑140 (MQ=255)
                               attattaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTCTATCCAAACTGGAGACTTGTAACAAAAAAta                                                                                                            >  1:22132/1‑139 (MQ=255)
                               aaattaatgaagaggacaaaaaaacaaccaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAAtt                                                                                                            >  2:3917‑M1/108‑140 (MQ=255)
                                atttaatgaagagaacaaaaaaacaacaaaaaatttagaaagtatgtaatttagggacccattagggactccaaacccaataaacactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTa                                                                                                           >  1:80930‑M1/107‑140 (MQ=255)
                                   taatgaagaagaaaaaaaaacaactaaaattttagaaagtatgtaatttcgggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACtt                                                                                                        >  2:217971‑M1/104‑140 (MQ=255)
                                     atgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTAt                                                                                                      <  1:58727‑M1/39‑1 (MQ=255)
                                      tgaaggggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc                                                                                                     >  1:272249‑M1/101‑140 (MQ=255)
                                      gTTGGTGCACTTACTGACAATAGTGGCAGAGCCGAATCTAAGAAAGATGATACTAAAAAGAAGTAAGGTAGTCATAACGTTTATATGTTATCCACCGTTCTGTATCCAAACTGGAGACTTTTATCATAAAATTaaaaaaa                                                                                                     <  2:22203/140‑7 (MQ=255)
                                        aagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccctgagggactccaaacccaataaatactgttgttacaaggtttttaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCAt                                                                                                   >  2:175299‑M1/99‑140 (MQ=255)
                                            ggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAACTTAATTATCATTCaa                                                                                               <  1:38460‑M1/46‑1 (MQ=255)
                                            ggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaa                                                                                               <  1:136063‑M1/46‑1 (MQ=255)
                                              acaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaaa                                                                                             >  2:296805‑M1/93‑140 (MQ=255)
                                                ttACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAg                                                                                           >  1:49188/1‑140 (MQ=255)
                                                     gaaaaTAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTaaaa                                                                                      >  2:90822/4‑140 (MQ=255)
                                                     aacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTaaaa                                                                                      >  1:89671‑M1/86‑140 (MQ=255)
                                                     aacaactaaaagtttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTaaaa                                                                                      >  1:37152‑M1/86‑140 (MQ=255)
                                                         actaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGc                                                                                  <  1:99280‑M1/59‑1 (MQ=255)
                                                         actaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGc                                                                                  <  1:99284‑M1/59‑1 (MQ=255)
                                                           acagCCAAAGCCGAATCTAAAAAAGACGATACTAATATGAAATTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCat                                                                                <  1:38600/137‑1 (MQ=255)
                                                             tGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTAGCATTCAAAAAGTAAAACAGCataa                                                                              >  2:133101/1‑140 (MQ=255)
                                                                   aGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCaa                                                                        <  1:90822/140‑1 (MQ=255)
                                                                     ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAgg                                                                      <  1:92969/140‑1 (MQ=255)
                                                                      cGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt                                                                     >  1:90661/1‑140 (MQ=255)
                                                                      cGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt                                                                     >  1:98310/1‑140 (MQ=255)
                                                                          tatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtat                                                                 >  2:305533‑M1/65‑140 (MQ=255)
                                                                            tgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATaa                                                               >  2:61254‑M1/63‑140 (MQ=255)
                                                                                  ttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttat                                                         >  1:263563‑M1/57‑140 (MQ=255)
                                                                                    atgatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatca                                                       <  1:262932/140‑1 (MQ=255)
                                                                                      gatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGTATAATATCAAGGTTTATAACTttatcatt                                                     >  2:199566/1‑140 (MQ=255)
                                                                                      gatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcatt                                                     >  2:231587/1‑140 (MQ=255)
                                                                                         aCTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTgtctcattatc                                                  >  1:135643/1‑140 (MQ=255)
                                                                                             ttagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaata                                              <  2:189158‑M1/95‑1 (MQ=255)
                                                                                             ttagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaata                                              >  1:41251‑M1/46‑140 (MQ=255)
                                                                                              tagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTataaataa                                             <  2:166336‑M1/96‑1 (MQ=255)
                                                                                                tGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAataata                                           <  2:49188/140‑1 (MQ=255)
                                                                                                         ttagtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTAACAATAATACCTCAtata                                  >  2:43435/1‑140 (MQ=255)
                                                                                                         aacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAACGTAAAACAGCATAATATCAAGGTTTATAAATTTATACTAAACAATAATACCTcatatc                                  <  2:262794‑M1/107‑2 (MQ=255)
                                                                                                         aacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCAtata                                  <  1:56065‑M1/107‑1 (MQ=255)
                                                                                                          tagtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataa                                 <  1:147779/140‑1 (MQ=255)
                                                                                                              cATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaaata                             <  2:300184/140‑1 (MQ=255)
                                                                                                               ataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaaataa                            <  1:112276‑M1/113‑1 (MQ=255)
                                                                                                                   cGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAACTTCCTTAGCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtt                        <  1:74202/140‑1 (MQ=255)
                                                                                                                   atactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtt                        <  1:63082‑M1/117‑1 (MQ=255)
                                                                                                                          tgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttaggga                 >  1:200866‑M1/17‑140 (MQ=255)
                                                                                                                          atGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttaggga                 >  1:197568/1‑140 (MQ=255)
                                                                                                                              acaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggacttt             >  1:277909‑M1/13‑140 (MQ=255)
                                                                                                                               caaggtttctaTGTAACCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttt            <  1:236916‑M1/129‑1 (MQ=255)
                                                                                                                               aTCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttt            <  2:98310/140‑1 (MQ=255)
                                                                                                                               aTCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttt            <  2:90661/140‑1 (MQ=255)
                                                                                                                                 cGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGTATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggacttttta          <  1:199566/140‑1 (MQ=255)
                                                                                                                                   aCCGTTTTGTATCCAAACTGGAGATTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagg        <  2:57990/140‑1 (MQ=255)
                                                                                                                                   aCCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagg        >  1:212269/1‑140 (MQ=255)
                                                                                                                                     ttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggga      <  1:69148‑M1/135‑1 (MQ=255)
                                                                                                                                     cGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggga      >  1:48523/1‑140 (MQ=255)
                                                                                                                                      gTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggac     >  2:237320/1‑140 (MQ=255)
                                                                                                                                        taTGTATCCAAACTGGATACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATAAATAATACCAAATATATAATAAAATtttaggctctttttagggtctt   <  2:127756‑M1/138‑1 (MQ=255)
                                                                                                                                        taTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttagggactttttagggactt   <  1:146104‑M1/138‑1 (MQ=255)
                                                                                                                                         ttGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTGAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCAATATCAATAATACCTCATATAAAATAAAATTttagggactttttagggacttt  >  2:176531/1‑140 (MQ=255)
                                                                                                                                          |                                                                                                                                          
AAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTT  >  CP000730/2085158‑2085434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.