Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 36,378 C→T 88.7% L58L (TTG→TTA USA300HOU_0026 ← IS431mec transposase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073036,3780CT88.7% 639.9 / 70.6 353L58L (TTG→TTAUSA300HOU_0026IS431mec transposase
Reads supporting (aligned to +/- strand):  ref base C (24/16);  new base T (170/139);  total (198/155)
Fisher's exact test for biased strand distribution p-value = 6.14e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 353 total aligned reads displayed.

ACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGA  >  CP000730/36242‑36511
                                                                                                                                        |                                                                                                                                      
 ccAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTACTAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATTTaaaa                                                                                                                                    >  2:91139/1‑140 (MQ=255)
  cAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATACAAt                                                                                                                                   >  2:156632/1‑140 (MQ=255)
  cAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTTTTGTACGTCTCATTAATACGCCATTTGTAATTAGCTTTTTTATGCATTTTCTTCCAAATTTGATAGAAAAt                                                                                                                                   >  1:266778/1‑140 (MQ=11)
     atatCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTgg                                                                                                                               >  1:238662/1‑140 (MQ=38)
      tatCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTggg                                                                                                                              <  1:111344/140‑1 (MQ=255)
      tatCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTGCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAACAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTggg                                                                                                                              <  2:176516/140‑1 (MQ=255)
         cTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGTGCa                                                                                                                           >  1:148679/1‑140 (MQ=255)
           aaTGTAGGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCata                                                                                                                         <  2:74334/140‑1 (MQ=11)
                  gtCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGa                                                                                                                  <  1:316122/140‑1 (MQ=21)
                   tCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATACAATTGGGGCATATTCTTGaa                                                                                                                 >  2:286318/1‑140 (MQ=255)
                   tCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGTGCATATTCTTGaa                                                                                                                 >  2:261370/1‑140 (MQ=11)
                   tCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGaa                                                                                                                 >  2:269626/1‑140 (MQ=255)
                   tCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTGTTTTATGCTTTTTCTTCCAAATTTTATATAAAATTGGGGCATATTCTTGaa                                                                                                                 >  2:38671/1‑140 (MQ=11)
                      ctctGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAAccc                                                                                                              <  1:202569/140‑1 (MQ=255)
                      ctctGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAAccc                                                                                                              <  1:134993/140‑1 (MQ=25)
                        ctGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCTAATTTGATATAAAATTGGGGCATATTGTTGAATCCat                                                                                                            >  1:287565/1‑139 (MQ=11)
                         tgtaTCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCCAc                                                                                                           >  1:176432/4‑140 (MQ=255)
                         tgtaTCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAAc                                                                                                           <  1:37273/137‑1 (MQ=255)
                         tGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATATAATTGGGGTATATTCTTGAACCCAAc                                                                                                           <  2:198990/140‑1 (MQ=255)
                          gtaTCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACg                                                                                                          >  2:216100/3‑140 (MQ=255)
                          gtaTCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGAATATTCTTGAACCCAACg                                                                                                          >  2:110124/3‑140 (MQ=255)
                          gCATCAATGGCACGATATAAATAGCGCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATGCGACATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAATTTTGCTATAAACTTGGGGCATATTGTTGAACCCAACg                                                                                                          >  1:193569/1‑140 (MQ=11)
                               aaTGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTGCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGa                                                                                                     >  1:200319/1‑140 (MQ=255)
                                aTGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGat                                                                                                    <  1:248790/140‑2 (MQ=16)
                                  ggCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTTTGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAATCCAACGGTAGATCg                                                                                                  >  2:273975/1‑140 (MQ=11)
                                   gCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGAGAGAAAATTGGGGGATATTCTTTAACCCAACGGTAGAccct                                                                                                 >  1:59328/1‑138 (MQ=11)
                                   gCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGt                                                                                                 >  1:215182/1‑140 (MQ=255)
                                   gCACGATATAAATACCTCCCTTTTCCTTTTATGTTTATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCgg                                                                                                 <  2:65723/140‑2 (MQ=11)
                                    cACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGatgctg                                                                                                >  2:244073/1‑135 (MQ=255)
                                     aCGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCGTATTCTTGACCCCAACGGTAGATCGttt                                                                                               >  1:83956/1‑139 (MQ=11)
                                     aCGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTATAAAAGTATCAAAATAAACTAGGGGCATATTCTTGAACCCAACGGTAGATCGTTg                                                                                               >  1:312817/1‑140 (MQ=11)
                                      cGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTTGGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCAGATTCTTGAACCCAACGGTAGACCGTTGa                                                                                              >  1:63854/1‑140 (MQ=255)
                                         tattAATAGCTCAATTTTCTTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatg                                                                                           <  2:41806/140‑1 (MQ=11)
                                         tataAATAGCTCCATTTTCCTTTTCTTTTGATATACGTCTCATCAATACGCAATTTGTAAGAGGCTTTTTTATTCTTTTTCTTCCAAATTTGATATAAAATTTGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatg                                                                                           >  1:61080/1‑140 (MQ=11)
                                         tataAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCATGAACCCAACGGTAGACCGTTGAatg                                                                                           >  1:243220/1‑140 (MQ=25)
                                         tataAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTTTTCTAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGtttgatg                                                                                           >  2:118598/1‑135 (MQ=11)
                                         tataAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTTAatg                                                                                           >  2:24862/1‑140 (MQ=255)
                                         tataAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatg                                                                                           <  2:284098/140‑1 (MQ=255)
                                          ataAATAGCTCCATTTTTCTTTTATTTTTATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatga                                                                                          <  1:252870/140‑1 (MQ=11)
                                            aaatagcctctatttCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatgagg                                                                                        <  2:293546/128‑3 (MQ=11)
                                            aaaTAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTTAatgatg                                                                                        >  2:20775/1‑140 (MQ=255)
                                             aaTAGCTCCCTTCTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAAtgatga                                                                                       >  2:70228/1‑140 (MQ=255)
                                             aaTAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAAtgatga                                                                                       <  1:307146/140‑1 (MQ=40)
                                              aTAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGaa                                                                                      <  2:96325/140‑1 (MQ=255)
                                                 gCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGt                                                                                   <  2:221824/140‑1 (MQ=25)
                                                   tCCATCGTCCTTTTATTTTGCTATAGGACACATCAATACGACATTTGTAATAAGCTTTTTTATGCTGTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGttt                                                                                 >  1:235297/1‑140 (MQ=11)
                                                    ccATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTa                                                                                <  2:315203/140‑1 (MQ=18)
                                                      aTTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTaaa                                                                              >  1:275889/1‑138 (MQ=255)
                                                      aTTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTaca                                                                              <  1:171433/140‑1 (MQ=255)
                                                       ttttCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTacac                                                                             <  1:257941/140‑1 (MQ=255)
                                                       ttttCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTacac                                                                             >  1:45486/1‑140 (MQ=255)
                                                         ttCCTTTTATTTTGATGTACGTCTCATCAATACGCCGTTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCCTATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTAcacca                                                                           >  2:42945/1‑140 (MQ=255)
                                                           ccTTTTATTTTGATGTACGTCCCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTTGGGCAAATTCTTTCACCCAACGGCACACCGTTGAATGATGAACGTTTACACCACg                                                                         >  2:58959/1‑140 (MQ=14)
                                                           ccTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTCCACCACg                                                                         >  1:100845/1‑140 (MQ=255)
                                                           ccTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACg                                                                         >  2:85485/1‑140 (MQ=255)
                                                           ccTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACg                                                                         <  1:207605/140‑1 (MQ=255)
                                                            tttttATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGt                                                                        <  1:281667/139‑1 (MQ=18)
                                                             ttttATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCACCGGTAGATCGTTGAATGATGAACGTTTACACCACGtt                                                                       >  1:95023/1‑140 (MQ=255)
                                                              tttATTTTGATGTACGTCTCATCAATACGCCAGTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTc                                                                      <  2:179968/140‑1 (MQ=255)
                                                              tttATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATCTAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGGATGATGAACGTTTACACCACGTTc                                                                      >  2:301718/1‑140 (MQ=11)
                                                               ttATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTct                                                                     <  1:117853/140‑2 (MQ=255)
                                                                 tttctGATTTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTctct                                                                   <  2:61668/136‑4 (MQ=11)
                                                                  ttttGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTTCCtt                                                                  >  2:149085/1‑140 (MQ=19)
                                                                  ttttGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCtt                                                                  <  1:133390/140‑1 (MQ=18)
                                                                    ttGATGTACGTCTCATCAATACGCCATTTGCAATAAGCTTTTTTCTGCTTTTTCTTCCAAATTTGATCCAAAATTGAGGGCTTTTTGATAACCCAACTGCCGACCAAGTTATGATGACCGTTTACACCAGGTTCCCTTaa                                                                <  2:67657/140‑1 (MQ=9)
                                                                    ttGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTaa                                                                <  2:230953/140‑1 (MQ=11)
                                                                    gtGATATCCGTCTCCGCAATACGCCAGTTGTAATAAGCTTTTGTATGCTTTTTCTTCCAAATTTGATATAAAATTGTGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTaa                                                                <  1:50778/139‑1 (MQ=11)
                                                                      gATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGATCCTAACGGTAGGTCGTTGAATGATGAGCGCTTTCTCCCCGTTCTCTTAata                                                              >  1:187857/1‑140 (MQ=11)
                                                                        tatACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACGCAACGGTAGATCGTTGAATGATGAACGTTTACACCCCGTTCTCTTAATAtt                                                            >  2:27664/3‑140 (MQ=11)
                                                                        tatACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGGTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATAtt                                                            >  1:128574/3‑140 (MQ=11)
                                                                           aCGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCCCGCTCTCTTAATATTTCa                                                         >  1:230519/1‑140 (MQ=11)
                                                                            cGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAGTATTTCAg                                                        >  2:137557/1‑140 (MQ=25)
                                                                            cGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAg                                                        >  1:294509/1‑140 (MQ=255)
                                                                                tcatcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTAAGatat                                                    >  2:101887/1‑140 (MQ=25)
                                                                                 catccATACCCCATTTGTAATCAGCTTTTTTATGCTTTTTCTTCCAATTTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGatata                                                   <  1:15850/140‑1 (MQ=11)
                                                                                   tcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATc                                                 <  2:254323/140‑1 (MQ=255)
                                                                                    caATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCa                                                >  1:212669/1‑140 (MQ=255)
                                                                                    caATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTCAACCCAACGGTCGATCGTTCAATGATGAACGTTTACACCACGTTCTCTTACTATTTCAGatatatac                                                >  1:144118/1‑138 (MQ=11)
                                                                                      aTACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCACATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGCTCGTTGAATGATGAACGTTTAAACTACGTTCTCTTAATATTTGAGATATATCagg                                              >  1:123760/1‑138 (MQ=11)
                                                                                       tACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGa                                             <  2:303561/140‑1 (MQ=255)
                                                                                       tACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGa                                             <  2:35503/140‑1 (MQ=255)
                                                                                       tACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATCTTTCAGATATATCCCGa                                             >  2:132764/1‑140 (MQ=255)
                                                                                        tcGCTATTTGTAATAAGCTTTTTTATGCTTCTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACTCCTCGGTAGTCCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGAt                                            <  2:193569/139‑1 (MQ=11)
                                                                                        aCGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGAt                                            >  2:88394/1‑140 (MQ=255)
                                                                                         cGCCGTTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATa                                           <  2:232443/140‑1 (MQ=16)
                                                                                          gCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCCCGTTCCCTTAATATTTCCGATATTTCGCGATaa                                          >  1:296488/1‑140 (MQ=11)
                                                                                           ccATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGCTATACCGCCCATACAGGTGCTAGAGTGCAACCGGAGATCGTTGAATGATTAACGTTTACATCACGTTCTCTTAATATTTCAGATATATCACGATagc                                         >  1:75382/1‑138 (MQ=2)
                                                                                           ccATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATagc                                         <  1:33903/140‑3 (MQ=11)
                                                                                           ccATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACAATagc                                         >  1:156411/1‑138 (MQ=11)
                                                                                           ccACTTGTAATAAGCTTTTTTATGCATTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGATCGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATagc                                         <  1:97096/140‑3 (MQ=11)
                                                                                              tttGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCa                                      <  2:279583/140‑1 (MQ=18)
                                                                                              tttGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCa                                      <  1:69881/140‑1 (MQ=21)
                                                                                               ttGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGCTAACTCaa                                     >  1:302352/1‑140 (MQ=21)
                                                                                                  taataaGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTTAACCCAACGGTAAACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTAAGCTATATCATGATAACTCaacac                                  >  2:50910/1‑137 (MQ=11)
                                                                                                  taataaGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCCCGATagcgcactgc                                  >  1:22707/1‑131 (MQ=11)
                                                                                                  taataaGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATGTCACGATAACTCAATgc                                  >  1:262844/1‑139 (MQ=16)
                                                                                                   aataaGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATgca                                 >  2:125489/1‑138 (MQ=11)
                                                                                                   aataaGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACCATAGCTCAATgca                                 >  1:13704/1‑138 (MQ=11)
                                                                                                                 tGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGAtagta                   <  2:295903/140‑1 (MQ=35)
                                                                                                                  gCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATAACTTAGAtagtag                  >  1:4352/1‑140 (MQ=25)
                                                                                                                                        |                                                                                                                                      
ACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGA  >  CP000730/36242‑36511

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: