New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1822717 =	62 (0.910)	3 (0.050)	3/238	NT	5.5%	intergenic (+38/+208)	USA300HOU_1697/ackA	possible universal stress protein/acetate kinase
	?	CP000730	1822745 =	47 (0.750)					intergenic (+66/+180)	USA300HOU_1697/ackA	possible universal stress protein/acetate kinase

CGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATAT  >  CP000730/1822605‑1822885                                                                                                                                              |                                                                                                                                             cGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGttt                                                                                                                                              <  2:651159/141‑1 (MQ=255) cGTACCGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGttt                                                                                                                                              <  1:220743/141‑1 (MQ=255)  gTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGTTCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGtttt                                                                                                                                             <  1:381706/141‑1 (MQ=255)    aCTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGtttttt                                                                                                                                           >  2:543126/1‑141 (MQ=255)    aCTGAAGAGTTACCAGCAGAATTATATCCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGtttttt                                                                                                                                           >  1:374748/1‑141 (MQ=255)     cTGAAGACGTAACAGCAGACTTCCAACCAGAAGTTGCAAAAACTCAATTACTTGAAAAATATCAAAATTAAATATAGATGATCATTATATAACTACTTGATCATTATGAACCAAGTGCA‑ACGTTCTGCACTTGGTTTTTTa                                                                                                                                          <  2:167992/141‑1 (MQ=255)       gAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTAtt                                                                                                                                        >  2:425537/1‑141 (MQ=255)       aaaattaactagtgtaatgtctcttttcacgaatatcttaaagaattaagtagtcgaagaagattatgaaaacattattaagtgagttttatttataaacaataaaaaaccaagtgcaactttctgcacttggttTTTTAt                                                                                                                                         >  2:736922‑M2/136‑141 (MQ=255)         agagTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGt                                                                                                                                      <  2:712437/141‑1 (MQ=255)            gTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCCATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTta                                                                                                                                   <  1:775237/141‑1 (MQ=255)               acaagcagACTTCCAACCACAAGTTGCAACAACTCAATTAGGTGAAAAATATCAAAATTCAATTTAGATGATCATTAGATAACTACTTGGTCATTGTAAACCAAGTGAA‑ACTTTGTGAACTTGGTTTTTTCTTGttattaa                                                                                                                                >  2:221243/4‑136 (MQ=255)                      gACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAAc                                                                                                                         >  2:568942/1‑141 (MQ=255)                      gACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAAc                                                                                                                         <  1:404620/141‑1 (MQ=255)                        cTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTc                                                                                                                       >  1:432489/1‑141 (MQ=255)                         agcacgtgacaggaatatcttagagaattaagtagtcgaagaagattatgaaaacattattaagtgagttttatttataaacaataaaaaaccaagtgcaactttctgcacttggttTTTTATTGTTTATAAATAAAACTc                                                                                                                       <  2:660165‑M2/24‑1 (MQ=255)                          tCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCAc                                                                                                                     <  1:156240/141‑1 (MQ=255)                            cAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAATATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACtt                                                                                                                   <  2:243886/141‑1 (MQ=255)                             aaCCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTta                                                                                                                  <  1:610606/141‑1 (MQ=255)                                 acaAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGTTCAATTGGTAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTtaataa                                                                                                              <  1:367401/141‑1 (MQ=255)                                  caAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATCACTACTTGATCATTATGAACCAAGTGCA‑ACATTCTGCACTTGGTCTTTAATTGTTTTTAAATAAAACTCACTTaataat                                                                                                             >  2:537874/1‑141 (MQ=255)                                  caAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTaataat                                                                                                             >  2:185210/1‑141 (MQ=255)                                     gTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGtt                                                                                                          >  1:408321/1‑141 (MQ=255)                                     gTTGCAACAACTCAATTACGTGAAAAAAGTCCAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTATTAATGtt                                                                                                          >  2:749010/1‑141 (MQ=255)                                      ttGCAACAACTCAATTACGTGCAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATACTTATGAACCAAGTGCA‑ACTTTGTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGttt                                                                                                         >  2:369166/1‑141 (MQ=255)                                         caacaaCTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTCTTGTTTATAAATCAAACTCACTTAATAATGTTTTct                                                                                                      >  1:521236/1‑140 (MQ=255)                                             aaagaattaagtagtcgaagaagattatgaaaacattattaagtgagttttatttataaacaataaaaAACCAAGTGCA‑GAAAGTTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAAt                                                                                                  <  1:736922‑M1/73‑1 (MQ=255)                                                  aattagcttaaaaaTATCATAATTAAATACAGATGTTCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCGTCACTTGGTTTTTTATTGGTTATAAATAGAACTCACTTACTAATGTTTTCATAAtcttct                                                                                             <  2:121159/132‑1 (MQ=255)                                                   aTTACTTGAAAAATATCAAAATTAAAGATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATcttctt                                                                                            <  2:744419/141‑1 (MQ=255)                                                   aTTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATcttctt                                                                                            >  1:461198/1‑141 (MQ=255)                                                   aTTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATcttctt                                                                                            >  1:747415/1‑141 (MQ=255)                                                   aTTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACAAGAACATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACGTAATAATGTTTTCATAATcttctt                                                                                            >  1:448778/1‑141 (MQ=255)                                                    ttACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCttcttc                                                                                           <  2:431383/141‑1 (MQ=255)                                                     tACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATcttcttgg                                                                                          >  1:398307/1‑139 (MQ=255)                                                        gTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGact                                                                                       <  1:255079/141‑1 (MQ=255)                                                        gTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGact                                                                                       <  1:674734/141‑1 (MQ=255)                                                         tGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGacta                                                                                      <  1:486234/141‑1 (MQ=255)                                                             aaaTATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTa                                                                                  >  2:765978/1‑141 (MQ=255)                                                                 atCAAAATTAAATATAGATGATCATTAGGTAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTc                                                                              >  1:414947/1‑141 (MQ=255)                                                                  tCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCt                                                                             >  2:525622/1‑141 (MQ=255)                                                                     attatgaaaacattattaagtgagttttatttataaacaataaaaaaccaagtgcaactttctgcacttggttTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCttt                                                                           <  1:736922‑M2/68‑1 (MQ=255)                                                                                 gatgatCATTAAATAACTACATGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGa                                                              <  2:375306/141‑1 (MQ=255)                                                                                   tgatCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGaaa                                                            >  2:519816/1‑141 (MQ=255)                                                                                    tatCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGaaaa                                                           <  1:505111/140‑1 (MQ=255)                                                                                        aTTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTACTTCTTTAAGATATTCGTGAAAAaaga                                                       >  2:459742/1‑141 (MQ=255)                                                                                         ttAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAGTTCTTTAAGATATTCGTGAAAAGAGAc                                                      >  1:3820/1‑141 (MQ=255)                                                                                         gagttttatttataaacaataaaaAACCAAGTGCA‑GAAAGTTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTctctaagatattcctgtcacgtgct                                                      <  2:660165‑M1/117‑13 (MQ=255)                                                                                          tAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACa                                                     >  1:508334/1‑141 (MQ=255)                                                                                          tAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACa                                                     >  2:623822/1‑141 (MQ=255)                                                                                            gATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACAtt                                                   <  1:765978/141‑1 (MQ=255)                                                                                                  tactTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGCAAAGAGACATTACGCTa                                             >  2:519578/1‑141 (MQ=255)                                                                                                  tactTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTAGGTTTTTTATTGTTAATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTAAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTa                                             >  2:230952/1‑141 (MQ=255)                                                                                                   actTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAg                                            <  2:110452/141‑1 (MQ=255)                                                                                                     ttGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGCTAACCGGCAAAAGAGCCATTACACTAGtt                                          >  2:741459/1‑141 (MQ=255)                                                                                                     ttGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGtt                                          <  1:655185/141‑1 (MQ=255)                                                                                                     ttGATCATTACAAACCAAGTGCA‑ACTTTCTGCACCACGTTTTTTACTGTTTATAAATAAAACTCACTTAATAACGTTTTCATAATCTTCTTCAACTACATAATTCTTTAAGATATTCCTGAAAAGAGACATTACACCAGtc                                          <  2:288417/141‑2 (MQ=255)                                                                                                      tGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTa                                         <  1:159339/141‑1 (MQ=255)                                                                                                        aTCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAACTAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATTTTCGTGAAAAGATACATTACACTAGTTAAt                                       >  2:491113/1‑141 (MQ=255)                                                                                                          cATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAAttt                                     >  2:410540/1‑141 (MQ=255)                                                                                                           ataaaaAACCAAGTGCAGAAAGT‑TGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAAtttt                                    >  2:736922‑M1/7‑141 (MQ=255)                                                                                                                     AAGTGCA‑ACTTTCTGTACTTGGTTTTTTATTGTTTATGAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACTATAc                          >  1:547626‑M1/1‑141 (MQ=255)                                                                                                                      AGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACa                         >  1:281233‑M1/1‑141 (MQ=255)                                                                                                                         GCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACaaaa                      <  1:99265‑M1/141‑1 (MQ=255)                                                                                                                                    gcacttggttTTTTATTGTTTCTAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTAcc            >  1:402537‑M2/11‑141 (MQ=255)                                                                                                                                     cacttggttTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTAcct           >  1:233373‑M2/10‑141 (MQ=255)                                                                                                                                        ttggttTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTAcctcct        >  2:472480‑M2/7‑141 (MQ=255)                                                                                                                                            tttgttATGTTTTATAAATAAAACTCACTTAATAATGTTTCCATAACCTCCTTCGACTACATAATTCTGTCATATATTCGTGCAAACATACATTACACTCGCTAATTCTCAACCAATACAACAACCGTCttctgctcacat    <  2:31261/141‑12 (MQ=255)                                                                                                                                            ttTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCCCCTACat    >  2:694754‑M2/3‑141 (MQ=255)                                                                                                                                              ttttATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACatat  <  2:719318/141‑1 (MQ=255)                                                                                                                                              |                                                                                                                                             CGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATAT  >  CP000730/1822605‑1822885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.