| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 356,477 | A→G | 4.8% | W75R (TGG→CGG) | brnQ1 ← | LIVCS family branched chain amino acid:cation symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 356,477 | 0 | A | G | 4.8% | 242.4 / 2.7 | 86 | W75R (TGG→CGG) | brnQ1 | LIVCS family branched chain amino acid:cation symporter |
| Reads supporting (aligned to +/- strand): ref base A (23/57); new base G (2/2); total (26/60) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.19e-01 | |||||||||||
AATATAATTAAAGTCCATTGGTTATGCACAGGTAAAATGTGTCTTGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGCCTAGCATACCAATCCACATATTTTGACCCGCTGTATGGCCA > CP000730/356338‑356616 | aaTATAATTAAAGTCCATTGGTTATGCACAGGTAAAATGTGTCTTGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTACAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCAt < 1:532306/141‑1 (MQ=255)aaTATAAATAAAGTCCATTGGTTAGGCACAGGTAAAATGTGTCTTGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCAt < 1:507833/141‑1 (MQ=255) tatcATTAAAGTCCTTTGGTTATGCACAGGTAAAATGTGTCTTGTTCCCATTTCGTACGCGACATTTGCAGCACGTGGATTACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATgg < 2:345384/141‑1 (MQ=255) tataATTAAAGTCCATTGGTTATGCACAGGTAAAATGTGTCTTGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTGCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATgg < 2:494225/141‑1 (MQ=255) taATTAAAGTCCATTGGTTATGCACAGGTAAAATGTGTCTTGTACCAATTTCGTACCCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACCTGTAAATACCGACAGCAAAAATAAACCCGAACCTTGGAt > 2:461235/1‑141 (MQ=255) aaTTAAAGTCCATTGGTTATGCACAGGTAAAATGTGTCTTGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATg < 1:63860/141‑1 (MQ=255) aaTTAAAGTCCATTGGTTATGCACAGGTAAAATGTGTCTTGGACCAATTTCGTACGCGACATTTGCAGCACGTGGAATCCCGTAAAATGCGCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATg < 1:66567/141‑1 (MQ=255) aTTAAAGTCCATTGGTTATGCACAGGTAAAATGTGTCTTGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGAATGt > 2:429259/1‑141 (MQ=255) ttAAAGTCCATTGGTTATGCCACGGTTTATAGTGTCTTGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCGTGGATGta > 1:770814/1‑141 (MQ=255) ttAAAGTCCATTGGTTATGCACAGGTAAAATGTGTCTTGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCGTGGATGta > 1:715445/1‑141 (MQ=255) tAAAGTCCATTGGTTATGCACAGGTAAAATGTGTCTTGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGtat < 1:659056/141‑1 (MQ=255) tCCATTGGTTATGCACAGGTAAAATGTGTCTTCTACCAACTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACACGATCCATGGATGTTTACgtt < 2:70528/141‑3 (MQ=255) cATTGGTTATGCACAGGTAAAATGTGTCTTGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTg > 1:381339/1‑141 (MQ=255) cATTGGTTATGCACAGGTAAAATGTGTCTTGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCAGGGATGTATACGATTg > 1:679698/1‑141 (MQ=255) ttGGTTATGCACAGGTAAAATGTGTCTTGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGcc < 1:509779/141‑1 (MQ=255) tGGTTATGCGAAGGTAAAATGTGTCTTGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGCCATGTAAATCACGACAGCAAAAATAAACTCGAACCATGGAGGTATACGATTGcgt > 1:568665/1‑139 (MQ=255) tATGCACAGGTAAAATGTGTCTTGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTacac > 1:452390/1‑141 (MQ=255) tATGCACAGGTAAAATGTGTCTTGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAAACACATATTTATACGATTGCCTacac < 1:186656/141‑1 (MQ=255) tATGCACAGGTAAAATGTGTCTTGTACCAATTTCGTAAGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTacac > 2:708715/1‑141 (MQ=255) tGCACAGGTAAAAGGTGTCTTGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACtt < 1:698748/141‑1 (MQ=255) aaGGTAACATGAGTCTTGTACAAAGTTCGTACGCGACATTTCAAGTACACGGTCCAATTTAAAAGGATGGGATAGACATGTAAATTACGACAGAAAAAATCAACCCGAACCATGGATGTATACGATTGCCTACACttccga > 2:318772/2‑137 (MQ=255) aaTGTGTCTTGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTtc < 1:347535/141‑1 (MQ=255) tgtatcgaaCCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTtcatca < 2:462889/133‑1 (MQ=255) gtCTTGTCCCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAAGAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTcatcat < 1:681848/141‑1 (MQ=255) gtCTTGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTcatcat < 2:638491/141‑1 (MQ=255) cTTGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTGCACTTTCAACACCTTCATCCTaa > 1:466867/1‑141 (MQ=255) tGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATaaaa < 1:237084/141‑1 (MQ=255) ggTACCAATTGCGTACTCGAAATTTGCAGCACGTAGAATACCGTAAAATGCTCCAATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATaaaa < 2:62619/140‑1 (MQ=255) gTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAACATTCGCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAAt > 1:731980/1‑141 (MQ=255) gTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAAt > 1:485327/1‑141 (MQ=255) aCCAATTGCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGc < 1:617149/141‑1 (MQ=255) cAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGcaa < 2:73332/141‑1 (MQ=255) cAAGTTCGTATGCGACATTTGCGGCACGGGGAATACCCTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGcaa < 2:273131/141‑1 (MQ=255) cAAATTCGTACGCGACAGTTGCAGCACGGGGAATACCGTAAAAGGCGCCGAATGACATGCAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGcaa < 1:743013/141‑1 (MQ=255) aaTTTCGTCCGCGACAGTTGCAGCACGGGGGATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGcaac < 1:48127/141‑1 (MQ=255) aTTTCGTACGCCACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGCCTATGATTGCCTACACTTTCAACACCTTCATCATAAAATGcaaca < 1:340440/141‑1 (MQ=255) ttCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGcaacaac < 1:505791/141‑1 (MQ=255) tCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATCAAATGcaccaaca > 1:174000/1‑141 (MQ=255) cGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGcaacaacaa > 1:313250/1‑141 (MQ=255) cGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGcaacaacaa > 1:313146/1‑141 (MQ=255) cGTACGCGACATTTGCAGCACGTGGAATACCGGAAAATGCTCCGATAGACATGTAAATCACGAGAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACAACTTCATCATAAAATGcaacaacaa > 1:376195/1‑141 (MQ=255) aCGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATaa > 1:110090/1‑141 (MQ=255) aCGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTACAACAACCTCATCCTAAAATGCAACCACAATaa > 2:505112/1‑141 (MQ=255) cgACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAg < 1:141243/141‑1 (MQ=255) cgAAATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAg < 1:141063/141‑1 (MQ=255) gACATTTGCAGCACTGGGAAAACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGt < 2:731777/141‑1 (MQ=255) gACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGt < 1:656574/141‑1 (MQ=255) gACATTTGCAGCACGTCGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGt < 2:629356/141‑1 (MQ=255) aaTTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGtaa < 2:277166/140‑1 (MQ=255) aTTTGCCGCACGTCGAAATCAGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGtaat < 1:559091/141‑1 (MQ=255) aTTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGtaat < 1:436425/141‑1 (MQ=255) aTTAGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGtaat < 2:677112/141‑1 (MQ=255) tttGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGtaata < 2:381339/141‑1 (MQ=255) tGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATaaa < 1:415739/141‑1 (MQ=255) cGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTCCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGt < 1:5649/141‑1 (MQ=255) gAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAata < 1:416646/141‑1 (MQ=255) gAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAata < 1:516103/141‑1 (MQ=255) aaaTGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAg < 1:499505/141‑1 (MQ=255) ttcTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGc < 2:310051/139‑1 (MQ=255) tGCTCCGATAGACATGTCCATCATGACAGCCAAAATAAACCCGAACCATGGATATATAGAATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGc > 2:536101/1‑141 (MQ=255) tGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAAGGCAACAACAATAACAGTAATAAAGGGGGGGAATATGCCTGTAAgggg > 1:5709/1‑140 (MQ=255) tGCTCCGATAAACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGc < 1:99198/141‑1 (MQ=255) cGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGc < 2:477285/141‑1 (MQ=255) gACATCTAAAAGACGAAACCAACAACAATCCCCGACTCTGGATGTATACGATTGCCTACCCTTTCAACCCCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATCTGCCTGTAAGGGCAAAGCCTAGc < 2:657704/141‑1 (MQ=255) aaCATGTACATCGCGACAGCAAAAATAAACCCGAACCATTGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACCACAATAACAGTAATAAACGCGAGTAATATGCCTGTACTGGCAAAGCCTAGc < 2:657720/140‑1 (MQ=255) aCATGTAAATCACGACAGCAAAAATAAACCCGACCCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGCCTAGCa < 1:263858/141‑1 (MQ=255) aactCACAACAGCAAAAATCACCCCCCACCATGGATGTATCCGATTGCCTCCCCTTGCAACACCTTCATTATAAAATGCAACAACAACAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGCCTAGCATACCaa < 1:34892/138‑1 (MQ=255) aaaCCACGACAGGAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGCCTAGCATAccga < 2:92215/141‑3 (MQ=255) aaTCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGCCTAGCATACCAAt < 1:664519/141‑1 (MQ=255) aTCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACGCTTGGAACGCCGTCAGCGTAGACTGGAACAAATAATACAGGAAGAAACTGGATTAATATGCCTGTAAGGGCAAAGCCTAGCATACCaagc > 2:746214/1‑139 (MQ=255) ccGACCGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGCCTAGCATACCAATCcac < 1:677947/140‑1 (MQ=255) acaaCAGCAAAAATAACCCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGCCTAGCATACCAATCcac < 1:236430/138‑1 (MQ=255) aCGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGCCTAGCATACCAATCcac < 1:775517/141‑1 (MQ=255) aCAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGCCTAGCATACCAATCCACata > 1:616168/1‑141 (MQ=255) gCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGCCTAGCATACCAATCCACATAttt < 2:313250/141‑1 (MQ=255) gCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGCCTAGCATACCAATCCACATAttt < 2:313146/141‑1 (MQ=255) cAAACATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGCCTAGCATACCAATCCACATAtttt < 2:391989/141‑1 (MQ=255) aaaacatcaccccGTAGCATAGATGTAAACGATTGACTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGCCTAGCATACCAATCCACATAtttt < 2:323336/131‑1 (MQ=255) aCCCGAACCGTGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGCCTAGCATACCAATCCACATATTTTGACCCGCTg < 2:715445/141‑1 (MQ=255) aCCCGAACCGTGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGCCTAGCATACCAATCCACATATTTTGACCCGCTg < 2:770814/141‑1 (MQ=255) aCCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAACATGCAACAACAATAACAGTAATAAACGGCAGTAATATGCCTGTAAGGGCAAAGCCTAGCATACCAATCCACATATTTTGACCCGCTg < 2:426610/141‑1 (MQ=255) cccGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGCCTAGCATACCAATCCACATATTTTGACCCGCTGt > 2:200005/1‑141 (MQ=255) cccGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGCCTAGCATACCAATCCACATATTTTGACCCGCTGt > 2:757877/1‑141 (MQ=255) ccGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGAAAAGCCTAGCATACCAATCCACATATTTTTACCCGCTGtt > 1:338893/1‑140 (MQ=255) aaCCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGCCTAGCATACCAATCCACATATTTTGACCCGCTGTATgg < 1:50845/141‑1 (MQ=255) cATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGCCTAGCATACCAATCCACATATTTTGACCCGCTGTATGGCCa < 1:272527/141‑1 (MQ=255) | AATATAATTAAAGTCCATTGGTTATGCACAGGTAAAATGTGTCTTGTACCAATTTCGTACGCGACATTTGCAGCACGTGGAATACCGTAAAATGCTCCGATAGACATGTAAATCACGACAGCAAAAATAAACCCGAACCATGGATGTATACGATTGCCTACACTTTCAACACCTTCATCATAAAATGCAACAACAATAACAGTAATAAAGGGGAGTAATATGCCTGTAAGGGCAAAGCCTAGCATACCAATCCACATATTTTGACCCGCTGTATGGCCA > CP000730/356338‑356616 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |