New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2085296 =26 (0.820)30 (1.060) 21/232 NT 56.5% intergenic (‑558/‑400) mapW2/USA300HOU_1944 cell surface protein MapW2/hypothetical protein
?CP000730 = 2128343 23 (0.810)intergenic (+57/+1062) int/USA300HOU_2011 bacteriophage integrase/possible leukocidin subunit

AAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTT  >  CP000730/2085157‑2085434
                                                                                                                                           |                                                                                                                                          
tacatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacacaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTg                                                                                                                                           <  1:253415‑M1/2‑1 (MQ=255)
 acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggaatccaaacccaataaatactgttgttacaaggtttctaTGt                                                                                                                                          <  1:132945‑M1/3‑1 (MQ=255)
 acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagagacccattagggactccaaacccaataaatactgttgttacaaagattctaTGt                                                                                                                                          <  2:118388‑M1/3‑1 (MQ=255)
  aacaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTa                                                                                                                                         >  2:234903/4‑141 (MQ=255)
   atccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggaaccattagggactccaaacacaataaatactgttgttacaaggtttctaTGTAt                                                                                                                                        <  1:55647‑M1/5‑1 (MQ=255)
   aaaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTAt                                                                                                                                        <  2:32651/141‑1 (MQ=255)
     ccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATcc                                                                                                                                      <  1:323772‑M1/7‑1 (MQ=255)
         gtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAAc                                                                                                                                  >  1:343572‑M1/131‑141 (MQ=255)
         gtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAAc                                                                                                                                  >  1:144900‑M1/131‑141 (MQ=255)
             tctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacacattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGga                                                                                                                              <  2:227578‑M1/15‑1 (MQ=255)
                catttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTCGAGAc                                                                                                                           <  2:278184‑M1/18‑1 (MQ=255)
                   cATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGCAAGATGATACAGATTTGAAGTTAGTTAGTCATAACGATTATATGTTAGCGACCGTGTTTTATCCAAACTGGAGACttt                                                                                                                        >  2:263079/1‑141 (MQ=255)
                            gaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtgtgtaatttagggacccattagggactccaaaaccaataaatgctattgttacaaggtttctgTGTATGCAAACTGGAGACTTTTAACATaaa                                                                                                               <  1:43537‑M1/30‑1 (MQ=255)
                              aaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAAt                                                                                                             >  1:23905‑M1/110‑141 (MQ=255)
                                attattaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGCAGTTAGTTAGTCATAACGTTTATATGTTACCGACCGTTTTGTATCCAAACTGGAGATTCTTACCATAAAATTa                                                                                                           >  2:84427/1‑141 (MQ=255)
                                    taatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTa                                                                                                       >  1:212445‑M1/104‑141 (MQ=255)
                                      aGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc                                                                                                     <  1:234903/141‑1 (MQ=255)
                                       tgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCa                                                                                                    >  2:4191‑M1/101‑141 (MQ=255)
                                       tgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCa                                                                                                    <  1:291245‑M1/41‑1 (MQ=255)
                                        gaagaggaaaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCAt                                                                                                   >  2:188943‑M1/100‑141 (MQ=255)
                                             gCACGTACTGACGATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTCAAGATAGTTAGTCATAACATGTGTAATTTATCGACTGTTTTGTATCCAAACTGGCGCCTTTTAACATAACATTACTTATCATTaaaa                                                                                              >  2:326889/1‑141 (MQ=255)
                                                cTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaaaat                                                                                           >  2:179815/1‑140 (MQ=255)
                                                        cAATAGTGCCAAAGCCGAATATAAGAAAGATGATACTGATTTGACGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGCAACCAAACTGGAGACTTTTAAGATAAAATTACTTATCATTCAAAAAGTAAAACaa                                                                                   >  2:209751/1‑140 (MQ=255)
                                                            aGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCata                                                                               >  2:217103/1‑141 (MQ=255)
                                                               aattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataata                                                                            >  1:319080‑M1/77‑141 (MQ=255)
                                                                  tttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCa                                                                         <  2:47814‑M1/68‑1 (MQ=255)
                                                                    aGCCGAATCTAAGAAAGATGATATTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAg                                                                       <  2:143570/141‑1 (MQ=255)
                                                                    aGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAg                                                                       <  2:288563/141‑1 (MQ=255)
                                                                    aGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTAACATACAAAAAGTAAAACAGCATAATATCAAg                                                                       <  2:287549/141‑1 (MQ=255)
                                                                     gCCTAATCTAAGAAAGATGATACTGACTTGAAGTTAGTGAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAATCTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATTTCAAgg                                                                      <  2:179540/141‑1 (MQ=255)
                                                                     gCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAgg                                                                      >  1:16622/1‑141 (MQ=255)
                                                                      ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTATTAATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt                                                                     <  2:10801/141‑1 (MQ=255)
                                                                      ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt                                                                     >  1:178796/1‑141 (MQ=255)
                                                                      ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt                                                                     >  2:324921/1‑141 (MQ=255)
                                                                      aaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAACATAATATCAAGGt                                                                     >  1:250133‑M1/70‑141 (MQ=255)
                                                                         agtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTta                                                                  >  2:339181‑M1/67‑141 (MQ=255)
                                                                         agtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTta                                                                  >  2:214512‑M1/67‑141 (MQ=255)
                                                                         aaTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAACACAGCATAATATCACGGTTta                                                                  >  1:175604/1‑141 (MQ=255)
                                                                          aTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtat                                                                 <  2:224156/141‑1 (MQ=255)
                                                                              aagaaagaTGGTACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAATACAGCATAATATCAAGGTTTATaaat                                                             >  1:280345/1‑139 (MQ=255)
                                                                                   ttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatc                                                        <  2:37674‑M1/85‑1 (MQ=255)
                                                                                   ttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatc                                                        <  1:366282‑M1/85‑1 (MQ=255)
                                                                                   ttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCAAAATATCAAGGTTTATAACtttata                                                        <  2:307894‑M1/85‑2 (MQ=255)
                                                                                       ggacccattagggactccaaacccaatcaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCCAAAAGTAAAACAGCATAATATCAAGGTTTATAACtttatcattt                                                    <  1:129519‑M1/89‑2 (MQ=255)
                                                                                       ggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTGAAAAAGTAAGACAGCATAATATCAAGGTTTATAACTttatcatta                                                    <  1:259427‑M1/89‑1 (MQ=255)
                                                                                         acccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattatc                                                  <  1:152272‑M1/91‑1 (MQ=255)
                                                                                         acccattagggactccaaacccaataaatactgttgttacaaggattctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattatc                                                  <  1:148751‑M1/91‑1 (MQ=255)
                                                                                           ccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATAACTATCaa                                                <  2:339538‑M1/93‑1 (MQ=255)
                                                                                            cattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaat                                               >  2:13503‑M1/48‑141 (MQ=255)
                                                                                            cattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTACCaat                                               >  2:265020‑M1/48‑141 (MQ=255)
                                                                                             gATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTCTCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCCTTATCaata                                              >  2:306448/1‑141 (MQ=255)
                                                                                              ttagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataa                                             <  1:17253‑M1/96‑1 (MQ=255)
                                                                                              atgttaaGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGATACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAACAAGTATAATATCAAGGTTTATAACTTTATCATTATCaataa                                             <  1:263317/136‑1 (MQ=255)
                                                                                              aTTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataa                                             <  1:304109/141‑1 (MQ=255)
                                                                                              aTTTGAAGTTAGTTAGTCATAACGTTTATATGTAATCGACCGTTTTGTATCCAGAGTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTGAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataa                                             <  2:209544/141‑1 (MQ=255)
                                                                                               tagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGCGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataat                                            <  2:300874‑M1/97‑1 (MQ=255)
                                                                                               tagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataat                                            <  1:6769‑M1/97‑1 (MQ=255)
                                                                                                  gAAGTTAGTTAGTCATAGCGTTTTTATGTTATTGAGCTTTATGTATCTAAACTGGAGACTTTTAACATAAAATTACTTAGCATTCAAAAAGTAAAAAAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATAcc                                         <  2:368082/141‑1 (MQ=255)
                                                                                                         aaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCAtata                                  <  1:62574‑M1/107‑1 (MQ=255)
                                                                                                          aacccaataaatactgttgttacaaggtttctaTGTAGTGATACTGGAGCATTGGAACTTAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGATTTATAACTTTATCATTATCAATAATACCTCATataa                                 <  1:90066‑M1/108‑1 (MQ=255)
                                                                                                          aacccaataaaaactgttgatacaaggtttctaTGTATCCAAACTGGAGACTTTTAACAAAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataa                                 <  2:120386‑M1/108‑1 (MQ=255)
                                                                                                                    cGTTTATTTGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttt                       <  2:223919/141‑1 (MQ=255)
                                                                                                                      actgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtttta                     <  1:277060‑M1/120‑1 (MQ=255)
                                                                                                                      actgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACATCATATAAAATAAAAtttta                     <  1:300805‑M1/120‑1 (MQ=255)
                                                                                                                            tGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCCATGTAAGAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggact               <  1:88541/141‑1 (MQ=255)
                                                                                                                            gttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggact               <  2:116063‑M1/126‑1 (MQ=255)
                                                                                                                                    aCCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggg       <  2:133242/141‑1 (MQ=255)
                                                                                                                                      ttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggac     <  2:26421‑M1/136‑1 (MQ=255)
                                                                                                                                      cGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttaggggctttttagggac     >  2:340107/1‑141 (MQ=255)
                                                                                                                                         tttGTATCCAAACTGGAGGCTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTttagggactttttagggacttt  >  1:46786/1‑141 (MQ=255)
                                                                                                                                           |                                                                                                                                          
AAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTT  >  CP000730/2085157‑2085434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.