| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2085296 = | 26 (0.820) | 30 (1.060) | 21/232 | NT | 56.5% | intergenic (‑558/‑400) | mapW2/USA300HOU_1944 | cell surface protein MapW2/hypothetical protein |
| ? | CP000730 | = 2128343 | 23 (0.810) | intergenic (+57/+1062) | int/USA300HOU_2011 | bacteriophage integrase/possible leukocidin subunit | |||||
AAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTT > CP000730/2085157‑2085434 | tacatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacacaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTg < 1:253415‑M1/2‑1 (MQ=255) acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggaatccaaacccaataaatactgttgttacaaggtttctaTGt < 1:132945‑M1/3‑1 (MQ=255) acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagagacccattagggactccaaacccaataaatactgttgttacaaagattctaTGt < 2:118388‑M1/3‑1 (MQ=255) aacaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTa > 2:234903/4‑141 (MQ=255) atccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggaaccattagggactccaaacacaataaatactgttgttacaaggtttctaTGTAt < 1:55647‑M1/5‑1 (MQ=255) aaaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTAt < 2:32651/141‑1 (MQ=255) ccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATcc < 1:323772‑M1/7‑1 (MQ=255) gtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAAc > 1:343572‑M1/131‑141 (MQ=255) gtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAAc > 1:144900‑M1/131‑141 (MQ=255) tctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacacattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGga < 2:227578‑M1/15‑1 (MQ=255) catttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTCGAGAc < 2:278184‑M1/18‑1 (MQ=255) cATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGCAAGATGATACAGATTTGAAGTTAGTTAGTCATAACGATTATATGTTAGCGACCGTGTTTTATCCAAACTGGAGACttt > 2:263079/1‑141 (MQ=255) gaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtgtgtaatttagggacccattagggactccaaaaccaataaatgctattgttacaaggtttctgTGTATGCAAACTGGAGACTTTTAACATaaa < 1:43537‑M1/30‑1 (MQ=255) aaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAAt > 1:23905‑M1/110‑141 (MQ=255) attattaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGCAGTTAGTTAGTCATAACGTTTATATGTTACCGACCGTTTTGTATCCAAACTGGAGATTCTTACCATAAAATTa > 2:84427/1‑141 (MQ=255) taatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTa > 1:212445‑M1/104‑141 (MQ=255) aGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc < 1:234903/141‑1 (MQ=255) tgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCa > 2:4191‑M1/101‑141 (MQ=255) tgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCa < 1:291245‑M1/41‑1 (MQ=255) gaagaggaaaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCAt > 2:188943‑M1/100‑141 (MQ=255) gCACGTACTGACGATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTCAAGATAGTTAGTCATAACATGTGTAATTTATCGACTGTTTTGTATCCAAACTGGCGCCTTTTAACATAACATTACTTATCATTaaaa > 2:326889/1‑141 (MQ=255) cTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaaaat > 2:179815/1‑140 (MQ=255) cAATAGTGCCAAAGCCGAATATAAGAAAGATGATACTGATTTGACGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGCAACCAAACTGGAGACTTTTAAGATAAAATTACTTATCATTCAAAAAGTAAAACaa > 2:209751/1‑140 (MQ=255) aGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCata > 2:217103/1‑141 (MQ=255) aattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataata > 1:319080‑M1/77‑141 (MQ=255) tttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCa < 2:47814‑M1/68‑1 (MQ=255) aGCCGAATCTAAGAAAGATGATATTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAg < 2:143570/141‑1 (MQ=255) aGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAg < 2:288563/141‑1 (MQ=255) aGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTAACATACAAAAAGTAAAACAGCATAATATCAAg < 2:287549/141‑1 (MQ=255) gCCTAATCTAAGAAAGATGATACTGACTTGAAGTTAGTGAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAATCTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATTTCAAgg < 2:179540/141‑1 (MQ=255) gCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAgg > 1:16622/1‑141 (MQ=255) ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTATTAATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt < 2:10801/141‑1 (MQ=255) ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt > 1:178796/1‑141 (MQ=255) ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt > 2:324921/1‑141 (MQ=255) aaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAACATAATATCAAGGt > 1:250133‑M1/70‑141 (MQ=255) agtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTta > 2:339181‑M1/67‑141 (MQ=255) agtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTta > 2:214512‑M1/67‑141 (MQ=255) aaTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAACACAGCATAATATCACGGTTta > 1:175604/1‑141 (MQ=255) aTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtat < 2:224156/141‑1 (MQ=255) aagaaagaTGGTACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAATACAGCATAATATCAAGGTTTATaaat > 1:280345/1‑139 (MQ=255) ttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatc < 2:37674‑M1/85‑1 (MQ=255) ttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatc < 1:366282‑M1/85‑1 (MQ=255) ttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCAAAATATCAAGGTTTATAACtttata < 2:307894‑M1/85‑2 (MQ=255) ggacccattagggactccaaacccaatcaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCCAAAAGTAAAACAGCATAATATCAAGGTTTATAACtttatcattt < 1:129519‑M1/89‑2 (MQ=255) ggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTGAAAAAGTAAGACAGCATAATATCAAGGTTTATAACTttatcatta < 1:259427‑M1/89‑1 (MQ=255) acccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattatc < 1:152272‑M1/91‑1 (MQ=255) acccattagggactccaaacccaataaatactgttgttacaaggattctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattatc < 1:148751‑M1/91‑1 (MQ=255) ccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATAACTATCaa < 2:339538‑M1/93‑1 (MQ=255) cattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaat > 2:13503‑M1/48‑141 (MQ=255) cattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTACCaat > 2:265020‑M1/48‑141 (MQ=255) gATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTCTCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCCTTATCaata > 2:306448/1‑141 (MQ=255) ttagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataa < 1:17253‑M1/96‑1 (MQ=255) atgttaaGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGATACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAACAAGTATAATATCAAGGTTTATAACTTTATCATTATCaataa < 1:263317/136‑1 (MQ=255) aTTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataa < 1:304109/141‑1 (MQ=255) aTTTGAAGTTAGTTAGTCATAACGTTTATATGTAATCGACCGTTTTGTATCCAGAGTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTGAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataa < 2:209544/141‑1 (MQ=255) tagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGCGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataat < 2:300874‑M1/97‑1 (MQ=255) tagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataat < 1:6769‑M1/97‑1 (MQ=255) gAAGTTAGTTAGTCATAGCGTTTTTATGTTATTGAGCTTTATGTATCTAAACTGGAGACTTTTAACATAAAATTACTTAGCATTCAAAAAGTAAAAAAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATAcc < 2:368082/141‑1 (MQ=255) aaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCAtata < 1:62574‑M1/107‑1 (MQ=255) aacccaataaatactgttgttacaaggtttctaTGTAGTGATACTGGAGCATTGGAACTTAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGATTTATAACTTTATCATTATCAATAATACCTCATataa < 1:90066‑M1/108‑1 (MQ=255) aacccaataaaaactgttgatacaaggtttctaTGTATCCAAACTGGAGACTTTTAACAAAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataa < 2:120386‑M1/108‑1 (MQ=255) cGTTTATTTGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttt < 2:223919/141‑1 (MQ=255) actgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtttta < 1:277060‑M1/120‑1 (MQ=255) actgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACATCATATAAAATAAAAtttta < 1:300805‑M1/120‑1 (MQ=255) tGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCCATGTAAGAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggact < 1:88541/141‑1 (MQ=255) gttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggact < 2:116063‑M1/126‑1 (MQ=255) aCCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggg < 2:133242/141‑1 (MQ=255) ttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggac < 2:26421‑M1/136‑1 (MQ=255) cGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttaggggctttttagggac > 2:340107/1‑141 (MQ=255) tttGTATCCAAACTGGAGGCTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTttagggactttttagggacttt > 1:46786/1‑141 (MQ=255) | AAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTT > CP000730/2085157‑2085434 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |