| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2085309 | 13 (0.420) | 6 (0.220) | 6/230 | NT | 27.5% | intergenic (‑571/‑387) | mapW2/USA300HOU_1944 | cell surface protein MapW2/hypothetical protein |
| ? | CP000730 | 2128358 = | 20 (0.730) | intergenic (+72/+1047) | int/USA300HOU_2011 | bacteriophage integrase/possible leukocidin subunit | |||||
ACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTTAAATTTAAAATTAC > CP000730/2085171‑2085448 | acTTGCATTAGCAAATTTNTTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGga < 1:306851/140‑1 (MQ=255) tGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATATTACCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGAc < 1:280539/140‑1 (MQ=255) gtaccaaatTTATTAGTAGTTGGTGTGCTTACTGACACTAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGgggcaata < 2:81047‑M1/136‑9 (MQ=255) aTTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATaa > 1:175144/1‑140 (MQ=255) gTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc < 1:238607/140‑1 (MQ=255) aagaggacaaaaaaacaactaaagttttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCAt > 2:102845‑M1/99‑140 (MQ=255) gTGCACTTAGTGACAATAGAGCCAAACCTGAATCTACGAAACATGACACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCATTTTGTATCCAAACTGGAGACTTTTAACATAAAATTAATTATCATTc > 2:67586/1‑140 (MQ=255) cTTACTGACAATAGTGACAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGgggcaatataaacgcgctgatttaatcggacaatc < 2:44665‑M1/140‑36 (MQ=255) ttagggACAATCGTGCCAAAGGCTAATCTAAGAAAGATGAGACTGATGTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAg < 1:45989/135‑1 (MQ=255) cTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGATTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCACAAACTaa > 2:293594/1‑140 (MQ=255) aTAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGATAGTTAGTCATAACGTTTATATGTGATCGACCGTTTTGTATACAAACTGGgggcaatataaacgcgctgatttaatcggaaaaactacttgtatt > 2:34939‑M1/1‑95 (MQ=255) ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAga > 2:75944/1‑139 (MQ=255) aagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAACAAGTAAAACAGCATAATATcaagttt < 1:151492‑M1/73‑4 (MQ=255) tatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtat > 2:207118‑M1/65‑140 (MQ=255) aagaaagaTGATACTGAGCTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTGTTATCATCGCATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAAc < 1:50614/140‑1 (MQ=255) aagaaagaTGATACAGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGTATAATATCAAGGCTTATAAc < 1:222921/140‑1 (MQ=255) gatgatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatc < 2:354666/140‑1 (MQ=255) gatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCACACTGGgggcaatataaacgcgcggatttaatcggacaatcttcttatattaaaaataatgatgtcgtaatattcaatga > 2:310326‑M1/1‑66 (MQ=255) cggatTTGTAGTTAGTTAGTCATAACGTTTATATTTTATCGACCGTGTTGTATCCAAACTGGgggcaatataaacgcgctgatttaatcggacaatcttcttatattaaaaataatgatgtcgtaatattcaatgaagca < 1:118490‑M1/138‑79 (MQ=255) ccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattatca > 1:39191‑M1/49‑140 (MQ=255) cTGATTTGAAGTTAGATAGTCATATAGTTTATCTGTTATCGACCGTTTTGAATCCAAACTGGAGACTTTTAACATAAAATTACTTATTATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattatca < 1:206556/140‑1 (MQ=255) ttgtatttagtTATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACCGCATAATATCAAGGTTTATAACTGTATCATTATCAATAATACCt < 1:216339/134‑1 (MQ=255) cGTTTATATGTTATCTACCCTTTTGTATCCAAACTAGAGACTTTTAACATAAAATTACTTATCATTCCAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtt < 2:215222/140‑1 (MQ=255) tCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggacttttt < 2:175144/140‑1 (MQ=255) ccGTTTTGTATCCAAACTGGgggcaatataaacgcgctgatttaatcggaccatgttcgaaaattaaaaataatgatgtcgtaatattcaatgaagcatttgataatggtgcatcagacaaattattaagtaatgtgaaa < 1:350536‑M1/140‑121 (MQ=255) tATCCAAACTGGgggcaatataaacgcgctgatttaatcggacaatcttcttatattaaacataatgatgtcgtaatattcaatgaagcatttgataatggtgcataagacaaattaataattaatgtgaaaaaagaata > 1:298356‑M1/1‑12 (MQ=255) TATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaaa < 1:199491‑M1/140‑1 (MQ=255) CCAAACTGGAGACTTTTAACATAAAATTACTTATCATTTAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaaattt > 1:333196‑M1/1‑140 (MQ=255) cAAACTGGgggcaatataaacgcgctaatttaatcggacaaactacttatattaaaaataatgatgtcgtaatattcaatgaagcatttgataatggtgcatcagacaaattattaagtaatgtgaaaaaagaatatcct < 1:67993‑M1/140‑133 (MQ=255) aaCTGGgggcaatataaacgcgctgatttaatcggacaatcttcttatattaaaaataatgatgtcgtaatattcaatgaagcatttgataatggtgcatcagacaaattcttaagtaatgtgaaaaaagaatatcctta > 2:329639‑M1/1‑6 (MQ=255) gggggcaatataaacgcgctgatttaatcggacaatcttcttatattaaaaataatgatgtcgtaatattcaatgaagcatttgataatggtgcatcagacaaattattaagtaatgtgaaaaaagaatatccttatcaa < 1:16990‑M1/140‑139 (MQ=255) ggggcaatataaacgcgctgatttaatcggacaatcttcttatattaaaaataatgatgtcgtaatattcaatgaagcatttgataatggtgcatcagacaaattattaagtaatgtgaaaaaagaatatccttatcaaa > 1:233364‑M1/1‑1 (MQ=255) | ACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTTAAATTTAAAATTAC > CP000730/2085171‑2085448 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |