| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2388283 = | 35 (1.140) | 3 (0.110) | 3/224 | NT | 10.1% | intergenic (+18/+84) | USA300HOU_2247/USA300HOU_2248 | MFS family major facilitator transporter/hypothetical protein |
| ? | CP000730 | 2388362 = | 23 (0.860) | intergenic (+97/+5) | USA300HOU_2247/USA300HOU_2248 | MFS family major facilitator transporter/hypothetical protein | |||||
TATTTACTCATATGTTTTCATATAGTGAAATCTTCGGCTTTATGGCCGCTTTAGCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAAT > CP000730/2388144‑2388418 | tATTTACTCATATGTTTTCATATAGTGAAATCTTCGGCTTTATGGCCGCTTTAGCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAAt < 1:52747/140‑1 (MQ=255) atttgatattatGTTTTCATATAGTAAAATCTTCGGCTTTATGGCCGCTTTAGCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATa < 2:22425/131‑1 (MQ=255) aCTCATATGTTTTCATATAGTGAAATCTTCGGCTTTATGGCCGCTTTAGCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATaaaaa > 1:331548/1‑140 (MQ=255) cATATGTTTTCATATAGTGAAATCTTCGGCTTTATGGCCGCTTTAGCAAGCATTACTATGCTTGTTTACTCCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCa > 2:23595/1‑140 (MQ=255) tatGTTTTCATATAGTGAAATCTTCGGCTTTATGGCCGCTTTAGCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATg < 1:43117/140‑1 (MQ=255) tGTTTTCATATAGTGAAATCTTCGGCTTTATGGCCGCTTTAGCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGCCGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGcc > 1:73047/1‑140 (MQ=255) ttttCATATAGTGAAATCTTCGGCTTTATGGCCGCTTTAGCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCaa > 1:308669/1‑140 (MQ=255) tttctaaattgcgttctgaaacggatgaaagacaagtattctatttctatagtacttctcaaaagaaattgttagataaaattactaaagaaatagaagtgttaagcgttacaaactaaaaactTAAAAAGCATTCCAAt < 2:312065‑M1/16‑1 (MQ=255) ttctaaattgcgttctgaaacggatgaaagacaagtattctatttctatagtacttctcaaaagaaaatgttacaaaaaatgactaaagaaatagaagtgttaagcgttacaaactaaaaactTAAAAAGCATGCCAAtc > 1:48903‑M1/124‑140 (MQ=255) cATATAGTGAAATCTTCGGCTTTATGGCCGCTTTAGCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAAtctc > 2:299841/1‑140 (MQ=255) taGTGAAATCTTCGGCTTTATGGCCGCTTTAGCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAAACTCTAtt > 2:187731/1‑140 (MQ=255) aGTGAAATCTTCGGCTTTATGGTCTCTTTATCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATtc < 2:73047/140‑1 (MQ=255) aTCTTCGGCTTTATTGCCGCTTTAGTAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCAtt < 1:104755/140‑1 (MQ=255) tCGGCTTTATGGCCGCTTTAGCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATGCATCATTtgtc > 1:312065/1‑140 (MQ=255) tCGGCTTTACGGCCGCTTTAGCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTtgtc > 1:199485/1‑140 (MQ=255) tttATGGCCGCTTTAGCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTcc < 2:338523/140‑1 (MQ=255) ctatagtacttctcaaaagaaattgttagataaaattactaaagaaatagaagtgttaagcgttacaaactaaaaactTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACt > 1:149714‑M1/79‑140 (MQ=255) ttGTTTACTTTTTAATTCATGGATCTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATCCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCa < 1:31836/140‑1 (MQ=255) ttGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCa > 2:247900/1‑140 (MQ=255) cttcttAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCtttt > 2:169144/1‑140 (MQ=255) ttAATTCATGGACGTCATGTAACTAGAACTGCCATGAACTACATATTTATATTCAAACATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCCAGACGCATTTATAATCTCCTGCTTGACAtcccgttttac > 2:335867/1‑130 (MQ=255) aaTTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGtt > 1:226702/1‑140 (MQ=255) tgttagataaaattactaaagaaatagaagtgttaagcgttacaaactaaaaactTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGtttt < 2:180307‑M1/85‑1 (MQ=255) cGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGGATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGt > 1:237155/1‑140 (MQ=255) gTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTa < 1:141211/140‑1 (MQ=255) gTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTa < 1:290591/140‑1 (MQ=255) cATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAAc > 2:107382/1‑140 (MQ=255) aTGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACg > 1:325031/1‑140 (MQ=255) tGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGc < 2:199485/140‑1 (MQ=255) gTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCt > 1:125990/1‑140 (MQ=255) tAGAAATGCGATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAaca < 1:341261/140‑1 (MQ=255) gAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCCAGACGCGATTATGATGTACTGCTTGGCATGCTTTTTTAGTTTTTAGTTTGTAACGCTTAACACt > 1:158473/1‑140 (MQ=255) gAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTATGTCCCCAAGACGCAATTATCATGTAGTATTTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACt > 2:37411/1‑140 (MQ=255) aTGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTc > 2:329005/1‑140 (MQ=255) aTGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTCTTCGTTTGTAACGCTTAACACTTCTATTTc > 2:43693/1‑140 (MQ=255) tAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGt > 1:22620/1‑140 (MQ=255) aaaTATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTa > 1:319011/1‑140 (MQ=255) aaaTATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTa > 1:302051/1‑140 (MQ=255) atatTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAAt < 1:247900/140‑1 (MQ=255) atTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAAttt > 2:165819/1‑140 (MQ=255) ttCAAAAATAAAAAGCATTCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTaa < 2:272557/140‑1 (MQ=255) aaaactTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACa > 1:180307‑M1/7‑140 (MQ=255) aaaaaTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACaa < 1:299841/140‑1 (MQ=255) aaaaTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAAt < 2:311151/140‑1 (MQ=255) | TATTTACTCATATGTTTTCATATAGTGAAATCTTCGGCTTTATGGCCGCTTTAGCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAAT > CP000730/2388144‑2388418 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |