New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 512620 =35 (1.250)23 (1.260)
+TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAAC
21/170 NT 50.6% intergenic (+688/‑173) recR/rrs1 recombination protein RecR/16S ribosomal RNA
?CP000730 2176447 = 34 (1.220)noncoding (114/114 nt) rrf5 5S ribosomal RNA

ACATTTCTCGTTTCGTCAGATTCAAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAAATTATACA  >  CP000730/2176312‑2176583
                                                                                                                                       |                                                                                                                                        
gacatattgtcattcagttttcaatgttcatttttcttaccgacaagaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTg                                                                                                                                     <  2:257584‑M2/6‑1 (MQ=255)
gacatattgtcattcagttttcaatgttcatttttcttaccgacaagaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTg                                                                                                                                     <  2:91177‑M2/6‑1 (MQ=255)
  cttgctcGTTTCTTCAGATTCAAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGc                                                                                                                                   <  2:328034/137‑1 (MQ=255)
     tctcGTTTCGTCAGATTCAAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAAc                                                                                                                                <  2:174925/141‑1 (MQ=39)
         tcattcagttttcaatgttcatttttcttaccgacaagaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccctctttacgcgaaaaaacTGCCTGGCAACGTTc                                                                                                                            <  1:331479‑M2/15‑1 (MQ=255)
         gTTTCGTCAGATTCCAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTc                                                                                                                            >  1:184365/1‑141 (MQ=255)
             cGTCAGATTCAAACGTTTTCACTTCGCCATGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTAct                                                                                                                        <  1:190826/141‑1 (MQ=255)
               agttttcaatgttcatttttcttaccgacaagaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTActct                                                                                                                      >  1:286039‑M2/121‑141 (MQ=255)
                gttttcaatgttcatttttcttaccgacaagaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaacaaaatttgattaaaaaacTGCGTGGCAACGTTCTactctt                                                                                                                     >  2:75785‑M2/120‑140 (MQ=255)
                    ttCAAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTATTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCgg                                                                                                                 >  1:199950/1‑141 (MQ=255)
                    tcaattttcatttttcttaccgacaagaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCATCGTTCTACTCTAGCgg                                                                                                                 <  1:170646‑M2/26‑1 (MQ=255)
                     caatgttcatttttcttaccgacaagaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGa                                                                                                                >  2:312396‑M2/115‑141 (MQ=255)
                          cGTTTTCACTTCGCCAAGCCGTCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTa                                                                                                           <  1:246794/141‑1 (MQ=255)
                                     taccgacaagaagtaatttaacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGTAACGTAAGTTCGACTAc                                                                                                <  1:195557‑M2/43‑1 (MQ=255)
                                     cGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAc                                                                                                <  1:136293/141‑1 (MQ=39)
                                      accgacaagaattaattatacattttatcaatatctaagtcaataactatttttatcttgtccattttattttttaaccaaaatttgaataaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAcc                                                                                               <  2:250217‑M2/44‑1 (MQ=255)
                                        cgacaagaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCAt                                                                                             >  2:273002‑M2/96‑141 (MQ=255)
                                            aagaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttcttttttaaccaaaatataaataaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGAc                                                                                         <  2:166532‑M2/50‑1 (MQ=255)
                                             cATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACg                                                                                        <  1:210766/141‑1 (MQ=39)
                                              aaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGc                                                                                       <  2:8196‑M2/52‑1 (MQ=255)
                                                ttttctttGTGTTTGCTTTTATTTTGACGTTTTAGACAAAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTa                                                                                     <  2:93044/140‑1 (MQ=25)
                                                ctttctttGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTa                                                                                     <  2:33862/141‑1 (MQ=37)
                                                attaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTa                                                                                     >  2:100373‑M2/88‑141 (MQ=255)
                                                  taattatacattttatcaacatttaagtcaatatctttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAg                                                                                   <  2:186825‑M2/56‑1 (MQ=255)
                                                     ttatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAg                                                                                >  2:102830‑M2/83‑141 (MQ=255)
                                                      tatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGc                                                                               <  1:122177‑M2/60‑1 (MQ=255)
                                                       tgtgTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCt                                                                              >  1:37955/1‑141 (MQ=37)
                                                          gtTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTCCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTACGACTACCATCGACGCTAAGGAGCTTaa                                                                           >  1:188484/1‑141 (MQ=255)
                                                              gCTTTTATTTTGACCTTTTCGACATAAAAAAAGAGACCAAGCGGCTGCGCATCGTCTCATCGCACCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTc                                                                       <  1:156725/141‑1 (MQ=11)
                                                                atcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCTACTCTAAGGAGCTTAACTTCtg                                                                     <  2:65990‑M2/70‑1 (MQ=255)
                                                                 tttATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCtgt                                                                    <  1:163972/141‑1 (MQ=32)
                                                                  caacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAATATCGACTACCATCGACGCCAAGGAGCTTAACTTCtgtg                                                                   >  1:61725‑M2/70‑141 (MQ=255)
                                                                   aacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTgtgt                                                                  <  1:135981‑M2/73‑1 (MQ=255)
                                                                       tttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCgg                                                              <  1:32872‑M2/77‑1 (MQ=255)
                                                                       ttGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCCCTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCgg                                                              <  1:158601/141‑1 (MQ=17)
                                                                         gACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCa                                                            >  1:23404/1‑141 (MQ=32)
                                                                           agccaataaccttatttaacctgtccattttatttgttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCCACTCTAGCGGAACGCAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATg                                                          <  2:9753‑M2/81‑1 (MQ=255)
                                                                              taataaatttttttatcttgtccattttattttttaaccaaaatttgagtaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGa                                                       <  1:122045‑M2/84‑1 (MQ=255)
                                                                                   actttttttatcttgtccattttctttttgaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTGCCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAgg                                                  <  2:217312‑M2/89‑1 (MQ=255)
                                                                                    atttttttatgttttccattttatggggcagccaaaatgtgatcaaaaaacTGCCTGGTAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCGAAGGAGCTTAACTTCTGTGTTCCGCATGGGAACAGgt                                                 <  2:249313‑M2/90‑1 (MQ=255)
                                                                                      ttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGgtgt                                               <  1:41756‑M2/92‑1 (MQ=255)
                                                                                      tAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCAGTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCACGGGAACAGgtgg                                               >  2:87416/1‑140 (MQ=11)
                                                                                        ttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGa                                             <  1:273002‑M2/94‑1 (MQ=255)
                                                                                        aaaaaaGGGCTCTTGCGGTCTCAATGCTGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACATGTGTGa                                             <  2:184365/141‑1 (MQ=11)
                                                                                         tttagcgtgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAc                                            <  2:7050‑M2/95‑1 (MQ=255)
                                                                                         aaaaaGATGCCTTTCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAc                                            <  2:296493/141‑1 (MQ=12)
                                                                                         aaaaaGAGACCCTGCGGCCTCAATCCCGCTCATCGCATCCACTTTTTCCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAc                                            <  2:231214/141‑1 (MQ=11)
                                                                                          ttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcc                                           <  1:312396‑M2/96‑1 (MQ=255)
                                                                                          aaaaGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcc                                           <  1:261566/141‑1 (MQ=32)
                                                                                          aaaaGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcc                                           <  1:184475/141‑1 (MQ=32)
                                                                                            atcttgtcaattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACTTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcctc                                         <  2:208522‑M2/98‑1 (MQ=255)
                                                                                               agaCCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCTGAAGGTAAGTTCGACTACCATCGACGCTAAGCAGCTTAACTTCTGTGTTCAGCATGGGAACCGATGTCAcctacat                                      >  1:150485/1‑137 (MQ=11)
                                                                                                tgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTg                                     <  2:241818‑M2/102‑1 (MQ=255)
                                                                                                gaCCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTTTTTTTTTTTGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATGGACGCTGAGGAGCGTAACTTCTGTGTTCGGCATGGGAACAGGTGTGCCCTCCttc                                     >  2:174586/1‑140 (MQ=11)
                                                                                                gaCCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTg                                     >  1:112472/1‑141 (MQ=32)
                                                                                                  ccTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGGGTGACCTCCTTGCt                                   >  1:153287/1‑141 (MQ=17)
                                                                                                   cTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCta                                  <  2:61462/141‑1 (MQ=32)
                                                                                                   cTTGCGGTCTCAATGAGGCCCATCGCATCCACTTTTTGCCTGGCAACGTTCTACGCTAGAGGAACGTAAGTTCGACTACCATCGACGCTAACGAACTTAACTTCACGGTTCAGCATGGGCACAGGAGTGACCTCCGTGCta                                  >  2:75063/1‑141 (MQ=11)
                                                                                                       tttattgtttaaccaaaatttgattaaaaaacTGCCGTGCAACGTGCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGt                              <  1:301949‑M2/109‑1 (MQ=255)
                                                                                                        ggTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCGATAGTc                             >  2:208498/1‑141 (MQ=17)
                                                                                                         tattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGGTAAGGGGCTTAACTTCTGGGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGtcc                            >  1:27189‑M2/31‑140 (MQ=255)
                                                                                                                        aTCGCATCCACGTTTTGCCTGGCAACGTTCTACTCGAGCTGCACGTAAGTTCGACTACCATCCACGCTAAGGCGCTGAACTTCTGGGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATg             <  1:117848/141‑1 (MQ=11)
                                                                                                                          cGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCGCCAGACATATGAATGTa           >  1:169401/1‑141 (MQ=17)
                                                                                                                           gCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTaa          <  1:108472/141‑1 (MQ=32)
                                                                                                                             attaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATgtaatt        >  2:303064‑M2/11‑139 (MQ=255)
                                                                                                                             aTCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAAAt        <  1:178984/141‑1 (MQ=33)
                                                                                                                               ccACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAAATta      <  2:37955/141‑1 (MQ=35)
                                                                                                                                 cttttttGCCTGGTCACTTTCTACTCTTGCGGAACGTAAGTTCGACTACCATCGACGCAAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAAATtata    <  1:2607/139‑1 (MQ=11)
                                                                                                                                  cTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAAATTATAc   <  1:322236/141‑1 (MQ=33)
                                                                                                                                   tttttGCCTGGCAACTGTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAAATTATACa  <  2:330729/141‑1 (MQ=17)
                                                                                                                                       |                                                                                                                                        
ACATTTCTCGTTTCGTCAGATTCAAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAAATTATACA  >  CP000730/2176312‑2176583

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.